Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20206
(441 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 29 1.7
SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32) 29 2.2
SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053) 27 9.1
SB_20908| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053) 27 9.1
SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1) 27 9.1
SB_11728| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_631| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002) 27 9.1
SB_40674| Best HMM Match : Extensin_2 (HMM E-Value=0.19) 27 9.1
SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1) 27 9.1
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 50 TSRSCPPRTNST*SPITRKVLVMTVSSTVIAPLTPSNTTGT 172
T S P TN+T P+T + ++ + +S +P PS+ T
Sbjct: 849 TEASTEPHTNATILPVTTEAMMGSETSGTTSPTVPSSAAPT 889
>SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)
Length = 734
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +1
Query: 19 FTPVLENNRVYFKIMSTEDKQYLKPDNTKGSSDDRIIYGD 138
FT + E K MS E+KQ K DN KG S+ + GD
Sbjct: 204 FTEMEEKIDEKVKEMSLEEKQPQKKDNQKGKSEKKKGKGD 243
>SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)
Length = 659
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 180 GLKVPVVFEGVSGA-ITVDDTVITRTFRVIGLQV 82
G+ VVF+ +S + VD TV+ + ++GL+V
Sbjct: 471 GVDATVVFKAISTVGLGVDATVVLKAISIVGLEV 504
>SB_20908| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)
Length = 576
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 180 GLKVPVVFEGVSGA-ITVDDTVITRTFRVIGLQV 82
G+ VVF+ +S + VD TV+ + ++GL+V
Sbjct: 212 GVDATVVFKAISTVGLGVDATVVLKAISIVGLEV 245
>SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)
Length = 890
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 145 ADTFKHHWYLEPSMYESDVMFFVYNREYNS 234
AD H + +PS E FVYNR ++S
Sbjct: 857 ADANPSHHFKDPSATEHGTDIFVYNRPHSS 886
>SB_11728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 521
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 145 ADTFKHHWYLEPSMYESDVMFFVYNREYNS 234
AD H + +PS E FVYNR ++S
Sbjct: 333 ADANPSHHFKDPSATEHGTDIFVYNRPHSS 362
>SB_631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 145 ADTFKHHWYLEPSMYESDVMFFVYNREYNS 234
AD H + +PS E FVYNR ++S
Sbjct: 46 ADANPSHHFKDPSATEHGTDIFVYNRPHSS 75
>SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
Length = 458
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 23 PPCWKTTEFTSRSCPPRTNST 85
PP K T + R CPP T T
Sbjct: 135 PPLTKCTNYRKRRCPPLTKCT 155
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 23 PPCWKTTEFTSRSCPPRTNST 85
PP K T + R CPP T T
Sbjct: 149 PPLTKCTNYRKRRCPPLTKCT 169
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 23 PPCWKTTEFTSRSCPPRTNST 85
PP K T + R CPP T T
Sbjct: 163 PPLTKCTNYRKRRCPPLTKCT 183
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 23 PPCWKTTEFTSRSCPPRTNST 85
PP K T + R CPP T T
Sbjct: 177 PPLTKCTNYRKRRCPPLTKCT 197
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 23 PPCWKTTEFTSRSCPPRTNST 85
PP K T + R CPP T T
Sbjct: 191 PPLTKCTNYRKRRCPPLTRCT 211
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 23 PPCWKTTEFTSRSCPPRTNST 85
PP K T + R CPP T T
Sbjct: 233 PPLTKCTNYRKRRCPPLTRCT 253
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 23 PPCWKTTEFTSRSCPPRTNST 85
PP K T + R CPP T T
Sbjct: 275 PPLTKCTNYLKRRCPPLTKRT 295
>SB_40674| Best HMM Match : Extensin_2 (HMM E-Value=0.19)
Length = 291
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 23 PPCWKTTEFTSRSCPPRTNST 85
PP K T + R CPP T T
Sbjct: 225 PPLTKCTNYRKRRCPPLTRCT 245
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 23 PPCWKTTEFTSRSCPPRTNST 85
PP K T + R CPP T T
Sbjct: 253 PPLTKCTNYLKRRCPPLTKCT 273
>SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 259
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 23 PPCWKTTEFTSRSCPPRTNST 85
PP K T + R CPP T T
Sbjct: 34 PPLTKCTNYRKRRCPPLTRCT 54
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 23 PPCWKTTEFTSRSCPPRTNST 85
PP K T + R CPP T T
Sbjct: 146 PPLTKCTNYLKRRCPPLTKCT 166
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 23 PPCWKTTEFTSRSCPPRTNST 85
PP K T + R CPP T T
Sbjct: 160 PPLTKCTNYRKRRCPPLTRCT 180
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 23 PPCWKTTEFTSRSCPPRTNST 85
PP K T + R CPP T T
Sbjct: 188 PPLTKCTNYRKRRCPPLTKCT 208
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 23 PPCWKTTEFTSRSCPPRTNST 85
PP K T + R CPP T T
Sbjct: 202 PPLTKCTNYRKRRCPPLTRCT 222
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,333,360
Number of Sequences: 59808
Number of extensions: 241318
Number of successful extensions: 677
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -