Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20206
(441 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81062-8|CAD59145.1| 808|Caenorhabditis elegans Hypothetical pr... 37 0.007
Z81062-7|CAB02942.1| 755|Caenorhabditis elegans Hypothetical pr... 33 0.12
Z69384-6|CAA93414.3| 499|Caenorhabditis elegans Hypothetical pr... 29 1.1
AF024499-2|AAT48621.1| 576|Caenorhabditis elegans Hypothetical ... 29 1.5
AF024499-1|AAT48620.1| 941|Caenorhabditis elegans Hypothetical ... 29 1.5
Z81533-8|CAB04332.1| 917|Caenorhabditis elegans Hypothetical pr... 28 2.6
Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical pr... 27 4.6
Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical p... 27 4.6
Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical pr... 27 4.6
U50069-5|AAY86213.1| 206|Caenorhabditis elegans Hypothetical pr... 27 6.0
AL033508-3|CAA22054.1| 315|Caenorhabditis elegans Hypothetical ... 27 6.0
Z81540-5|CAB04405.2| 946|Caenorhabditis elegans Hypothetical pr... 27 8.0
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 27 8.0
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 27 8.0
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 27 8.0
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 27 8.0
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 27 8.0
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 27 8.0
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 27 8.0
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 27 8.0
>Z81062-8|CAD59145.1| 808|Caenorhabditis elegans Hypothetical
protein F15A4.8b protein.
Length = 808
Score = 36.7 bits (81), Expect = 0.007
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 17 SLPPCWKTTEFTSRSCPPRTNST*SPITRKVLVMTVSSTVIAPLTPSNTT 166
++P TT S + PP ++T +P+T+ V ST IAP+T +TT
Sbjct: 421 AIPDVTSTTTTKSSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTMPSTT 470
>Z81062-7|CAB02942.1| 755|Caenorhabditis elegans Hypothetical
protein F15A4.8a protein.
Length = 755
Score = 32.7 bits (71), Expect = 0.12
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +2
Query: 38 TTEFTSRSCPPRTNST*SPITRKVLVMTVSSTVIAPLTPSNTT 166
TTE S + PP ++T +P+T+ V ST IAP+T +TT
Sbjct: 393 TTE--SSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTMPSTT 433
>Z69384-6|CAA93414.3| 499|Caenorhabditis elegans Hypothetical
protein T11G6.4 protein.
Length = 499
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 22 TPVL-ENNRVYFKIMSTEDKQYLKPDNTKGS-SDDRIIYGDSTADTFKHH 165
TPVL + R K+ + EDK L D+ S S+D ++ D T KHH
Sbjct: 444 TPVLIKEKRKRHKLKAREDKALLNSDSDSNSDSEDDLLLNDQTTRR-KHH 492
>AF024499-2|AAT48621.1| 576|Caenorhabditis elegans Hypothetical
protein F42G2.4b protein.
Length = 576
Score = 29.1 bits (62), Expect = 1.5
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +1
Query: 127 IYGDSTADTFKHHWYLEPSMYESDVMFFVY-NREYNSVMTLDEEWPPTKTVKPWGTAEKF 303
+Y S FK Y + + E +FFV N + + +LD+ W K+ WG A
Sbjct: 156 LYDFSINGIFKLLQYFDDQVLEDLEIFFVESNNGFEKIRSLDQ-WKNAKSFTFWGCAFDI 214
Query: 304 PVIPNFLH 327
I + H
Sbjct: 215 KEIEHLFH 222
>AF024499-1|AAT48620.1| 941|Caenorhabditis elegans Hypothetical
protein F42G2.4a protein.
Length = 941
Score = 29.1 bits (62), Expect = 1.5
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +1
Query: 127 IYGDSTADTFKHHWYLEPSMYESDVMFFVY-NREYNSVMTLDEEWPPTKTVKPWGTAEKF 303
+Y S FK Y + + E +FFV N + + +LD+ W K+ WG A
Sbjct: 156 LYDFSINGIFKLLQYFDDQVLEDLEIFFVESNNGFEKIRSLDQ-WKNAKSFTFWGCAFDI 214
Query: 304 PVIPNFLH 327
I + H
Sbjct: 215 KEIEHLFH 222
>Z81533-8|CAB04332.1| 917|Caenorhabditis elegans Hypothetical
protein F36G9.13 protein.
Length = 917
Score = 28.3 bits (60), Expect = 2.6
Identities = 24/81 (29%), Positives = 35/81 (43%)
Frame = +1
Query: 106 GSSDDRIIYGDSTADTFKHHWYLEPSMYESDVMFFVYNREYNSVMTLDEEWPPTKTVKPW 285
G SD + DS D + H LEPS+ S V + + LD++W P T +
Sbjct: 295 GFSDIEKLTSDSK-DRWLHS-LLEPSVPLSGVK--TLTNFGSELRKLDDKWRPVTTENHY 350
Query: 286 GTAEKFPVIPNFLHGTXSPTK 348
T +K + N L T + K
Sbjct: 351 HTMKKMSALQNHLEKTMTSKK 371
>Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 229 NSVMTLDEEWPPTKTVKPWGTAEKFPVIPNFLH 327
N + D +WP K P G A+KF V LH
Sbjct: 266 NELKMADVQWPGEKANPPQGAADKFHVKVVTLH 298
>Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 229 NSVMTLDEEWPPTKTVKPWGTAEKFPVIPNFLH 327
N + D +WP K P G A+KF V LH
Sbjct: 266 NELKMADVQWPGEKANPPQGAADKFHVKVVTLH 298
>Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical
protein F38E11.5 protein.
Length = 1000
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 78 FVLGGHDLEVNSVVFQHGGKLP 13
F L GH+ VN V + HGG+ P
Sbjct: 179 FTLEGHEKGVNCVDYYHGGEKP 200
>U50069-5|AAY86213.1| 206|Caenorhabditis elegans Hypothetical
protein C09B9.8 protein.
Length = 206
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 384 STY*SVEPFTTTLSRGXCTMQKVGDNRKLLRCAPRLHGLRWR 259
+T+ +EP +T L G + DN++ C + +G WR
Sbjct: 23 TTFSRLEPISTRLILGSSS-SSTADNQRCYSCMSKYYGALWR 63
>AL033508-3|CAA22054.1| 315|Caenorhabditis elegans Hypothetical
protein Y106G6G.4 protein.
Length = 315
Score = 27.1 bits (57), Expect = 6.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 50 TSRSCPPRTNST*SPITRKVLVMTVSSTVIAPLTPSNTTGTL 175
TS PP TNS+ S + V+ ++S+ + L + T TL
Sbjct: 223 TSTDPPPTTNSSNSTVESVTSVIPINSSTVPVLNTTLQTSTL 264
>Z81540-5|CAB04405.2| 946|Caenorhabditis elegans Hypothetical
protein F46B3.5 protein.
Length = 946
Score = 26.6 bits (56), Expect = 8.0
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +1
Query: 130 YGDSTADTFKHHWYLEPSMYESDVMFFVYNREYNSVMTLDEEWPPTKTVKPWGTAEKFPV 309
+G T K YL +YE+ V + YN + + + P + KP+G FP
Sbjct: 101 HGPHTCRVHKKGHYL--LVYETPVQYDPYNLPIENYLASIDSSDPLGSTKPFGLRGDFPD 158
Query: 310 I 312
I
Sbjct: 159 I 159
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 26.6 bits (56), Expect = 8.0
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 85 LKPDNTKGSSDDRIIYGDSTADTFKH 162
LK ++ +G +D+ ++ S+ADTFK+
Sbjct: 330 LKEEDERGDNDEDVVKMRSSADTFKN 355
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 26.6 bits (56), Expect = 8.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 263 GGHSSSSVITLLYSRL*TKNMTSLSYMEGSRYQWCLKVSAVLS 135
G S + I+ + S K + S SY+E R +W LK++ +S
Sbjct: 20 GARESIAAISDMLSSQHKKPVRS-SYVESDRVEWALKIACTIS 61
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 26.6 bits (56), Expect = 8.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 263 GGHSSSSVITLLYSRL*TKNMTSLSYMEGSRYQWCLKVSAVLS 135
G S + I+ + S K + S SY+E R +W LK++ +S
Sbjct: 20 GARESIAAISDMLSSQHKKPVRS-SYVESDRVEWALKIACTIS 61
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 26.6 bits (56), Expect = 8.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 263 GGHSSSSVITLLYSRL*TKNMTSLSYMEGSRYQWCLKVSAVLS 135
G S + I+ + S K + S SY+E R +W LK++ +S
Sbjct: 78 GARESIAAISDMLSSQHKKPVRS-SYVESDRVEWALKIACTIS 119
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 26.6 bits (56), Expect = 8.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 263 GGHSSSSVITLLYSRL*TKNMTSLSYMEGSRYQWCLKVSAVLS 135
G S + I+ + S K + S SY+E R +W LK++ +S
Sbjct: 78 GARESIAAISDMLSSQHKKPVRS-SYVESDRVEWALKIACTIS 119
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 26.6 bits (56), Expect = 8.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 263 GGHSSSSVITLLYSRL*TKNMTSLSYMEGSRYQWCLKVSAVLS 135
G S + I+ + S K + S SY+E R +W LK++ +S
Sbjct: 78 GARESIAAISDMLSSQHKKPVRS-SYVESDRVEWALKIACTIS 119
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 26.6 bits (56), Expect = 8.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 263 GGHSSSSVITLLYSRL*TKNMTSLSYMEGSRYQWCLKVSAVLS 135
G S + I+ + S K + S SY+E R +W LK++ +S
Sbjct: 50 GARESIAAISDMLSSQHKKPVRS-SYVESDRVEWALKIACTIS 91
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 26.6 bits (56), Expect = 8.0
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 85 LKPDNTKGSSDDRIIYGDSTADTFKH 162
LK ++ +G +D+ ++ S+ADTFK+
Sbjct: 330 LKEEDERGDNDEDVVKMRSSADTFKN 355
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,081,626
Number of Sequences: 27780
Number of extensions: 180203
Number of successful extensions: 604
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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