Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20206
         (441 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.1  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   3.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   4.5  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   6.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   7.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 62   CPPRTNST*SPITRKVLVMTVSSTVIAPLTPSNTTGTL 175
            C    ++  +PI  K LVM+  S +++   PS   G +
Sbjct: 1173 CQTEQDAPEAPIAIKALVMSSESILVSWRPPSQPNGVI 1210


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
          precursor protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 99 VIGLQVLFVLGGHDLEVNSVVFQHGGKLPGD 7
          VI +  + V    +L+  +V+F+HG ++P +
Sbjct: 3  VIAILAMVVGVQAELKQINVIFRHGDRIPDE 33


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 36  KQQSLLQDHVHRGQTVPEAR*HERF 110
           + Q ++Q HV    T+PE +   RF
Sbjct: 386 RNQDVVQTHVLTIHTIPEVKVTPRF 410


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
          phosphatase protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -1

Query: 60 DLEVNSVVFQHGGKLPGD 7
          +L+  +V+F+HG ++P +
Sbjct: 1  ELKQINVIFRHGDRIPDE 18


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 304 ETSPLCPKASR 272
           E SPLCP A R
Sbjct: 207 EQSPLCPPAPR 217


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 17  SLPPCWKTTEFTSRSCPPRTNST*SPITRKVLVMTVSSTVIAPLTPS 157
           S+P    +T   S+  P    S  SP++   LV  V S     L PS
Sbjct: 366 SIPKLNLSTALMSQPPPNFGVSQVSPVSMSALVSAVRSPAGGQLPPS 412


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 1   EKVSWKFTPVLENNRVYFKIMSTEDKQYL 87
           E + + F P + +  V  K + TED + L
Sbjct: 262 EGIGYDFIPTVLDRNVIDKWIKTEDNESL 290



 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -1

Query: 219 VVDEEHDVAFV 187
           ++D+EHD AF+
Sbjct: 470 ILDDEHDDAFI 480


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,062
Number of Sequences: 438
Number of extensions: 2305
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)