Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20206
(441 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00940.1 68417.m00127 Dof-type zinc finger domain-containing ... 29 1.1
At5g57655.2 68418.m07204 xylose isomerase family protein contain... 29 1.4
At5g57655.1 68418.m07203 xylose isomerase family protein contain... 29 1.4
At1g28320.1 68414.m03475 protease-related similar to Protease de... 28 2.4
At1g04910.1 68414.m00488 expressed protein contains Pfam PF03138... 28 3.2
At5g66260.1 68418.m08354 auxin-responsive protein, putative GP:1... 27 4.2
At3g53330.1 68416.m05884 plastocyanin-like domain-containing pro... 27 4.2
At1g69830.1 68414.m08034 alpha-amylase, putative / 1,4-alpha-D-g... 27 4.2
At1g64150.1 68414.m07267 expressed protein contains Pfam profile... 27 4.2
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui... 27 5.6
At3g17550.1 68416.m02241 NLI interacting factor (NIF) family pro... 27 5.6
At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR... 26 9.8
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 26 9.8
At2g39650.1 68415.m04862 expressed protein contains Pfam profile... 26 9.8
At2g22300.1 68415.m02646 ethylene-responsive calmodulin-binding ... 26 9.8
>At4g00940.1 68417.m00127 Dof-type zinc finger domain-containing
protein similar to DNA-binding protein DAG1/BBFa
GI:4581965 [Arabidopsis thaliana]
Length = 294
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 160 HHWYLEPSMYESDVMFFVYNREYNSVMTLDEEWPPTKTVKPWGTA 294
HH Y Y+ +M N YN+++T PPT T TA
Sbjct: 3 HHQYHHHDQYQHQMMTSTNNNSYNTIVTTQP--PPTTTTMDSTTA 45
>At5g57655.2 68418.m07204 xylose isomerase family protein contains
similarity to Xylose isomerase (EC 5.3.1.5)
(Swiss-Prot:P22842) [Thermoanaerobacter ethanolicus]
Length = 477
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 217 NREYNSVMTLDEEWPPTKTVKP-WGTAEKFPVIPNFLHG 330
N+ + V+ L +E +KP WGTA+ F + P ++HG
Sbjct: 157 NKNLDEVIELAKELQKGSKIKPLWGTAQLF-LHPRYMHG 194
>At5g57655.1 68418.m07203 xylose isomerase family protein contains
similarity to Xylose isomerase (EC 5.3.1.5)
(Swiss-Prot:P22842) [Thermoanaerobacter ethanolicus]
Length = 287
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 217 NREYNSVMTLDEEWPPTKTVKP-WGTAEKFPVIPNFLHG 330
N+ + V+ L +E +KP WGTA+ F + P ++HG
Sbjct: 157 NKNLDEVIELAKELQKGSKIKPLWGTAQLF-LHPRYMHG 194
>At1g28320.1 68414.m03475 protease-related similar to Protease degS
[Precursor] (SP:P44947) [Haemophilus influenzae];
similar to DegP protease precursor (GI:2565436)
[Arabidopsis thaliana]
Length = 709
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 338 DXVPCKKLGITGNFSAVPQGFTVFVGGH 255
+ VP K IT NFS+ P G T V GH
Sbjct: 498 EYVPGKLQPITANFSSPPLGTTAHVVGH 525
>At1g04910.1 68414.m00488 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'growth regulator protein' based on similarity to axi 1
protein (GB:X80301) (GI:559920) from [Nicotiana
tabacum], which, due to scienitific fraud was retracted.
Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
PMID:10400497.
Length = 519
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -1
Query: 297 LRCAPRLHGLRWRPFFIKCHNTVVLSVVDEEHDVAFVHGGLKVPVV-FEGVSGAITVDDT 121
LRC H LR++P +K ++V + + H ++ +H ++ ++ F G ++
Sbjct: 224 LRCRVNYHALRFKPHIMKLSESIVDKLRSQGHFMS-IHLRFEMDMLAFAGCFDIFNPEEQ 282
Query: 120 VITRTFR 100
I R +R
Sbjct: 283 KILRKYR 289
>At5g66260.1 68418.m08354 auxin-responsive protein, putative
GP:10185816 auxin-induced protein TGSAUR12 {Tulipa
gesneriana)
Length = 99
Score = 27.5 bits (58), Expect = 4.2
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 323 KKLGITGNFSAVPQG-FTVFVGGHSSSSVITLLY 225
KK + NF+ VP+G F V+VG S VI + +
Sbjct: 23 KKSSVDVNFNGVPKGHFVVYVGHSRSRHVIPISF 56
>At3g53330.1 68416.m05884 plastocyanin-like domain-containing
protein similar to mavicyanin SP:P80728 from [Cucurbita
pepo]
Length = 310
Score = 27.5 bits (58), Expect = 4.2
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +1
Query: 154 FKHHWYLEPSMYESDVMFFVYNREYNSVMTLDEE 255
+ + W + D +FF YN+E N V + +E
Sbjct: 203 YYYKWSEGKQFHVEDTLFFQYNKELNDVREITDE 236
>At1g69830.1 68414.m08034 alpha-amylase, putative /
1,4-alpha-D-glucan glucanohydrolase, putative similar to
SP|P17859 Alpha-amylase precursor (EC 3.2.1.1)
(1,4-alpha-D-glucan glucanohydrolase) {Vigna mungo},
alpha-amylase [Malus x domestica] GI:7532799; contains
Pfam profile PF00128: Alpha amylase, catalytic domain
Length = 887
Score = 27.5 bits (58), Expect = 4.2
Identities = 25/101 (24%), Positives = 42/101 (41%)
Frame = +1
Query: 73 DKQYLKPDNTKGSSDDRIIYGDSTADTFKHHWYLEPSMYESDVMFFVYNREYNSVMTLDE 252
DK +K + GS + + G + WYLE ++ + +V+ L
Sbjct: 481 DKPDIKISSGTGSGFEILCQGFNWESNKSGRWYLELQEKADELASLGF-----TVLWLP- 534
Query: 253 EWPPTKTVKPWGTAEKFPVIPNFLHGTXSPTKRCCKRFYRL 375
PPT++V P G K N +GT K K+F+++
Sbjct: 535 --PPTESVSPEGYMPKDLYNLNSRYGTIDELKDTVKKFHKV 573
>At1g64150.1 68414.m07267 expressed protein contains Pfam profile
PF01169: Uncharacterized protein family UPF0016
Length = 370
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 153 GVSGAITVDDTVITRTFRVIGLQVLFVLGGHDLEVNSV 40
G G +T+ V+ RTF + + F GG DL ++ +
Sbjct: 197 GALGIMTIISVVLGRTFHYVDEVLPFRFGGTDLPIDDI 234
>At4g38600.1 68417.m05464 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1888
Score = 27.1 bits (57), Expect = 5.6
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 50 TSRSCPPRTNST*SPITR--KVLVMTVSSTVIAPLTPSNTTGT 172
+S S PP S P TR + + + SS+ +AP PS++T T
Sbjct: 18 SSSSSPPPPPSASGPTTRSKRARLSSSSSSSLAPTPPSSSTTT 60
>At3g17550.1 68416.m02241 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 296
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/48 (20%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 28 VLENNRVYF--KIMSTEDKQYLKPDNTKGSSDDRIIYGDSTADTFKHH 165
+++ R+YF ++++ ++ Y+K + + + ++ D T+D + HH
Sbjct: 169 LIDPKRIYFGDRVITRDESPYVKTLDLVLAEERGVVIVDDTSDVWTHH 216
>At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1231
Score = 26.2 bits (55), Expect = 9.8
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = +1
Query: 1 EKVSWKFTPVLENN----RVYFKIMSTEDKQYLKP---DNTKGSSDDRIIYGDSTADTFK 159
+ SWK TP +E+N R+ FK +D P D+ KG+S G T+ T K
Sbjct: 1111 DSTSWKETPRMEDNRQDRRISFKTGEGDDCPIATPTTADSKKGNSLFSYFLGRDTSITKK 1170
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 99 VIGLQVLFVLGGHDLEVNSVVFQHGGK 19
V+G LF L GH +V +VF GGK
Sbjct: 135 VVGESGLFRLRGHRDQVTDLVFLDGGK 161
>At2g39650.1 68415.m04862 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 291
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 90 LQVLFVLGGHDLEVNSVVFQHGGKLPG 10
L L L G+D V S +Q GGK+PG
Sbjct: 114 LAKLLRLSGYDAAVCSARWQGGGKVPG 140
>At2g22300.1 68415.m02646 ethylene-responsive calmodulin-binding
protein, putative (SR1) identical to partial sequence of
ethylene-induced calmodulin-binding protein GI:11545505
from [Arabidopsis thaliana]; contains Pfam profiles
PF03859: CG-1 domain, PF00612: IQ calmodulin-binding
motif, and PF00023: Ankyrin repeat
Length = 1032
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -1
Query: 300 LLRCAPRLHGLRWRPFFIKCHNTVVLSVVDE-EHDVA 193
+L+C +H PF++ C N + S V E E+ VA
Sbjct: 517 ILQCVAPMHEAGRVPFYVTCSNRLACSEVREFEYKVA 553
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,697,107
Number of Sequences: 28952
Number of extensions: 172451
Number of successful extensions: 503
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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