Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20205
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    27   1.3  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    27   1.8  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    25   9.5  
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    25   9.5  

>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 282 IKCFSDVFRWLVGRLLREYEIVQYIIKT*V*S--WLATESPALVYVC 416
           +KCF     W+    +RE  IV +I +  V    +L T +   +Y+C
Sbjct: 237 LKCFKSCLSWVATDSIREANIVSHICQILVQGPIFLKTHAIDCIYIC 283


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 163 QYLSL*SYLRGVW-WGTARGCQCVAFLSFFA 74
           +YL   S    ++ WG A  C C+A +SF A
Sbjct: 280 EYLGFVSTFMAIFIWGLAAWCYCLAMVSFLA 310


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 350 LYNLILSKETPDEPSKH 300
           ++NL+ S+E+P  P+KH
Sbjct: 634 VHNLVASEESPAPPAKH 650


>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 133 GVWWGTARGCQCVAFLS 83
           G W+G    C CVA LS
Sbjct: 129 GQWFGPTTSCSCVARLS 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,500
Number of Sequences: 5004
Number of extensions: 37921
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)