Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20205
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888...    29   2.4  
12_02_0482 + 19541017-19541139,19542687-19542765,19542971-195430...    27   7.2  
05_07_0277 - 28909502-28909621,28910053-28910583,28910629-289107...    27   9.6  

>11_06_0621 +
           25587476-25587604,25588230-25588423,25588800-25588874,
           25589434-25591852
          Length = 938

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 385 ASHDYTHVFIIYCTISYSRRRRPTSHRNTSEKHLISIQLINYQLYP 248
           ASH + H+ +   T+SY  R +  + + T   +   +Q  N Q  P
Sbjct: 17  ASHPHPHILLAVVTVSYPNRGKVDAAKETLNPNFPFVQFSNPQPVP 62


>12_02_0482 +
           19541017-19541139,19542687-19542765,19542971-19543025,
           19543179-19543268,19543344-19543413,19543580-19543850,
           19543969-19544026,19544113-19544237,19544326-19544397,
           19544484-19544617
          Length = 358

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 87  RKATH*HP-RAVPHQTPRK*LHRLKY 161
           RK TH  P RA+P  +PR  +HR K+
Sbjct: 94  RKRTHAQPVRAIPAVSPRPVVHRFKH 119


>05_07_0277 -
           28909502-28909621,28910053-28910583,28910629-28910721,
           28910758-28911501
          Length = 495

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = -2

Query: 401 RWALSREPRLHSRLYNILYNLILSKETPDEPSKHIRKTFN*YSINQLSIIPYKTYKNRPV 222
           +W   REP L S L+  L+N+   ++ P      + KT     ++ +SII    Y +   
Sbjct: 290 QWMTWREPYLKSLLHIKLFNMKACQKLPPLGQLPLLKTAEINGMSAVSIIDDAFYGDNGT 349

Query: 221 FVNL 210
           F +L
Sbjct: 350 FPSL 353


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,517,065
Number of Sequences: 37544
Number of extensions: 224144
Number of successful extensions: 408
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)