Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20205
         (540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)                      28   5.6  
SB_19622| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   27   9.8  

>SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)
          Length = 939

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/53 (28%), Positives = 20/53 (37%)
 Frame = +1

Query: 13  KVVRRKKTHWETRXRPRYLTSQRN*GKPHTDTRARSPTKPLVNNFIDLNIVPR 171
           ++ RR+K  W+     R     R    P T    R+P  P   N     I PR
Sbjct: 680 EIARRRKQFWQASALYRTRNDPRTRNDPRTRNDPRTPNDPRTRNDPRTRIDPR 732


>SB_19622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 13  KVVRRKKTHWETRXRPRYLTSQRN*GKPHTDTRARSPTKPL 135
           +V+  +    ET  +PR L SQR+ G P  DT+ +  T+ L
Sbjct: 182 RVIENEGNDVETGPKPRALESQRD-GLPVADTQPKKTTEAL 221


>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1574

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 63  LPNIAKKLRKATH*HPRAVPHQTPRK*LHRLKYC 164
           +P I K+L  A H  P  +P  +P K  +  KYC
Sbjct: 319 VPAIVKELDWANHVWPTDLPEDSPHKKPYVQKYC 352


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 37  HWETRXRPRYLTSQRN*GKPHTDTRARSPTKPLV 138
           HW  +  P+  T+ +   KP     A+ P KP++
Sbjct: 644 HWSHKDAPKQDTATKKPAKPADSKPAKKPVKPVM 677


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,519,046
Number of Sequences: 59808
Number of extensions: 262422
Number of successful extensions: 531
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)