Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20205
         (540 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089634-1|AAL90372.1|  211|Drosophila melanogaster RE50345p pro...    28   7.1  
AE014296-2751|AAF49452.2|  211|Drosophila melanogaster CG13033-P...    28   7.1  
AE014296-2209|AAN11867.1|  797|Drosophila melanogaster CG32107-P...    28   7.1  

>AY089634-1|AAL90372.1|  211|Drosophila melanogaster RE50345p
           protein.
          Length = 211

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 93  LSLVSLRC*VAWPXTSLPVSFLPPNYLPPV 4
           +SL S R  V    + LP+ +LPP  LPPV
Sbjct: 14  VSLASCRSVVRRDVSHLPLEYLPPVELPPV 43


>AE014296-2751|AAF49452.2|  211|Drosophila melanogaster CG13033-PA
           protein.
          Length = 211

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 93  LSLVSLRC*VAWPXTSLPVSFLPPNYLPPV 4
           +SL S R  V    + LP+ +LPP  LPPV
Sbjct: 14  VSLASCRSVVRRDVSHLPLEYLPPVELPPV 43


>AE014296-2209|AAN11867.1|  797|Drosophila melanogaster CG32107-PA
           protein.
          Length = 797

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 376 DYTHVFIIYCTISYSRRRRPTSHRNTSEKHLISI 275
           DY H   +YC   Y  +  P +  N+SE+  +SI
Sbjct: 223 DYLHAHRLYCIGWYDAKILPATMHNSSEQFSVSI 256


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,981,532
Number of Sequences: 53049
Number of extensions: 390060
Number of successful extensions: 845
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2053700352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)