Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20205
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73971-1|CAA98249.2|  929|Caenorhabditis elegans Hypothetical pr...    31   0.53 
AF224743-1|AAF82248.1|  929|Caenorhabditis elegans leucine-rich ...    31   0.53 
AF016449-11|AAG23992.1|  353|Caenorhabditis elegans Serpentine r...    30   1.2  
AF016449-9|AAG23993.2|  351|Caenorhabditis elegans Serpentine re...    29   2.8  
AF016449-13|AAG24003.1|  350|Caenorhabditis elegans Serpentine r...    28   3.7  

>Z73971-1|CAA98249.2|  929|Caenorhabditis elegans Hypothetical
           protein C50H2.1 protein.
          Length = 929

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 142 YLRGVWWGTARGCQCVAFLSFFA 74
           Y   VWW T  GC+   FL+ FA
Sbjct: 498 YRHAVWWQTGWGCRAAGFLAVFA 520


>AF224743-1|AAF82248.1|  929|Caenorhabditis elegans leucine-rich
           repeat-containingG protein-coupled receptor protein.
          Length = 929

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 142 YLRGVWWGTARGCQCVAFLSFFA 74
           Y   VWW T  GC+   FL+ FA
Sbjct: 498 YRHAVWWQTGWGCRAAGFLAVFA 520


>AF016449-11|AAG23992.1|  353|Caenorhabditis elegans Serpentine
           receptor, class t protein7 protein.
          Length = 353

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 130 VWWGTARGCQCVAFLSF 80
           + WG + GC C+A+LSF
Sbjct: 276 ILWGWSSGCMCIAYLSF 292


>AF016449-9|AAG23993.2|  351|Caenorhabditis elegans Serpentine
           receptor, class t protein9 protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 139 LRGVWWGTARGCQCVAFLSF 80
           L  + WG + GC C+A+L+F
Sbjct: 271 LSHIIWGWSSGCMCIAYLTF 290


>AF016449-13|AAG24003.1|  350|Caenorhabditis elegans Serpentine
           receptor, class t protein8 protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 124 WGTARGCQCVAFLSF 80
           WG + GC C+A+L+F
Sbjct: 278 WGWSSGCMCIAYLAF 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,873,485
Number of Sequences: 27780
Number of extensions: 203681
Number of successful extensions: 430
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)