Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20205
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -3

Query: 313 SHRNTSEKHLISIQLINYQLYPIKLTKTDRYSL 215
           SH     +H  ++ + +  L PIK    D Y +
Sbjct: 234 SHTTDENRHSSTLDIDHKMLTPIKSEPIDAYEM 266


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 449 LFIHSKKKRNITNVN*RWALSREPRLHSRLYNILYNLILSKETPDE 312
           LFI S +  ++  ++     S + RL +RLY    N   S +T D+
Sbjct: 183 LFISSLENISLNGIDPELTESEQHRLQNRLYT---NDSTSSKTDDD 225


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 449 LFIHSKKKRNITNVN*RWALSREPRLHSRLYNILYNLILSKETPDE 312
           LFI S +  ++  ++     S + RL +RLY    N   S +T D+
Sbjct: 221 LFISSLENISLNGIDPELTESEQHRLQNRLYT---NDSTSSKTDDD 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,551
Number of Sequences: 438
Number of extensions: 2722
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)