Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20203
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch...    26   3.7  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   3.7  
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    25   4.9  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   4.9  
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...    25   6.5  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.6  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   8.6  

>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 232

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 296 PTACSXTPWCSDFRNDQVVNYILDD 222
           P+    +   S F+NDQ++N IL+D
Sbjct: 90  PSGLDGSQLSSSFQNDQLLNVILED 114


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 264 GTPWSXATSCGSATDSTLSESTSP 335
           GT    A S GSAT  T SE T+P
Sbjct: 927 GTSNKPAFSFGSATSKTTSEGTAP 950


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 120 NKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSII 227
           N+++  K+    L G Y +A      ++ QGKGS+I
Sbjct: 109 NEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 120 NKELEEKLYNSILTGDYDSAVRQSLE 197
           + +LE+ +  ++LTGD  SAV+  LE
Sbjct: 551 DSDLEKNITEALLTGDVLSAVKACLE 576


>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 204 NQGKGSIIQNVVNNLIITEVGTPWSXATSCGSATDSTLSESTSPITLDS 350
           N+ KG   +    NL++ E G P   ATS G+     +++    +  D+
Sbjct: 5   NERKGFDFEYYQRNLLLQEKGFPTPKATSTGTTIVGVIAKDCIVLGADT 53


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 206 VLVFQALTDSAVVVTGEDAVVQFLLEFFV 120
           +  F  +T   V+V  EDAVV+F+L   V
Sbjct: 178 IYFFLGVTVQYVMVLPEDAVVEFVLTILV 206


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 261 VGTPWSXATSCGSATDSTLSESTSPITLDSSWP 359
           V TP +   S  ++T     ++TSPI   SS P
Sbjct: 208 VNTPLNQPPSYAASTQPEFQQTTSPIFSSSSTP 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,787,378
Number of Sequences: 5004
Number of extensions: 31275
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)