Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20203
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221...    29   2.8  
03_04_0206 - 18493178-18495310                                         28   3.7  
02_05_1127 + 34292894-34293284,34293948-34295443                       28   5.0  
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358...    28   5.0  
12_02_0514 - 19912066-19913346                                         27   6.5  
03_02_0839 - 11653332-11653373,11653515-11653586,11653678-11654223     27   8.7  

>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
            17722189-17722332,17722415-17722722,17723433-17723568,
            17723748-17723841,17723976-17724073,17724951-17725004,
            17725704-17726150,17726227-17726393,17726540-17726663,
            17726751-17726837,17727000-17727056,17727492-17727560,
            17727664-17727811,17727893-17728116,17728842-17728958,
            17729649-17729742,17730573-17730640,17733278-17733334,
            17733412-17733511,17733638-17733674,17734077-17734200,
            17735254-17735322,17735371-17735410,17735905-17735993,
            17736849-17736953,17737033-17737104,17737814-17737936,
            17738049-17738117,17738966-17739059,17739145-17739231,
            17740184-17740351,17740436-17740552,17741484-17741590,
            17741671-17741803,17742564-17742667,17743504-17743629,
            17744148-17744216,17744996-17745064,17745278-17745358,
            17745444-17745533,17745896-17746000,17747803-17747873,
            17748320-17748461,17749266-17749330,17750081-17750168,
            17750236-17750325,17750437-17750673,17751064-17751170,
            17751625-17751832,17752376-17752546
          Length = 2366

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = -1

Query: 352  DESKVIGEVLSDNVLSVADPQLVAXLHGVPTSVMIRLLTTFWMMEPLPWFS 200
            D + +I + + +N+ S+ D +  + +  +  S +IRLL T   + P  W +
Sbjct: 1137 DPAAMINQNIEENLFSMLDEETDSEIAALVRSTIIRLLYTSCPLRPSRWLA 1187


>03_04_0206 - 18493178-18495310
          Length = 710

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 155 DAVVQFLLEFFVRTAHAYRGHFSDAGADGEHARREHHEKF 36
           + V   ++    +  H YRG+F D  +  E  R+E + KF
Sbjct: 364 NTVCNEIIHLHDKNLHVYRGNFDDFESGYEQKRKEMNRKF 403


>02_05_1127 + 34292894-34293284,34293948-34295443
          Length = 628

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 112 AVLTKNSRRNCTTASSPVTTTALSVRAWNTRTKARAPS 225
           A  T++SRR  TT++S  T +A + R+ +  ++  APS
Sbjct: 8   AQTTEDSRRRATTSTSTPTCSAATSRSASRSSRPLAPS 45


>02_04_0371 + 22434710-22435102,22435428-22435624,22435707-22435824,
            22436458-22436574,22436702-22436803,22437431-22437487,
            22437976-22438044,22438423-22438533,22438597-22438791,
            22439023-22439121,22439656-22440222,22440344-22440568,
            22441036-22441338,22441640-22441707,22441947-22442105,
            22442230-22442475,22442549-22442680,22443243-22443351,
            22444131-22444283,22444359-22444601,22444695-22444862,
            22445013-22445156,22445238-22445699,22446495-22446791,
            22446867-22447024,22447139-22447246,22447474-22447732
          Length = 1752

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = -3

Query: 263  DFRNDQVVNYILDDGALALVLVFQALTDSAVVVTGEDAVVQFLLEFFVRTAHAYRGHFSD 84
            D  N   +++ +   A  L+ + + +TD AVVV G     +  L   +   H   G    
Sbjct: 1526 DVENSNQISFSVQSVADLLLKLIRNITDGAVVVVGYSMGARIALHMALNQNHKISGAVII 1585

Query: 83   AGADG 69
            +G+ G
Sbjct: 1586 SGSPG 1590


>12_02_0514 - 19912066-19913346
          Length = 426

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -3

Query: 479 RSLFFSLPIXVCKSLV--RGIKSGAELQERGCSF 384
           R+  FSL I +C + +  RGI + +ELQ+ G  F
Sbjct: 216 RNCPFSLCINICPNTIVPRGIPAASELQDNGVRF 249


>03_02_0839 - 11653332-11653373,11653515-11653586,11653678-11654223
          Length = 219

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = -3

Query: 194 QALTDSAVVVTGEDAVVQFLLEFFVRTAHAYRGHFSDAGADGEHARREHH 45
           Q  T +  +     A  Q  LE F+  A A  G     GADG    R HH
Sbjct: 64  QGATGNGFLRPAGAAAGQMTLEDFLSRAGADSGSGGGGGADGARWARAHH 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,073,449
Number of Sequences: 37544
Number of extensions: 223358
Number of successful extensions: 633
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)