Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20203
         (508 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    25   1.1  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    24   3.4  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   4.5  
AY579078-1|AAT81602.1|  425|Anopheles gambiae neuropeptide F rec...    23   7.9  
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    23   7.9  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    23   7.9  

>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 9/42 (21%), Positives = 22/42 (52%)
 Frame = +3

Query: 222 IIQNVVNNLIITEVGTPWSXATSCGSATDSTLSESTSPITLD 347
           +++ ++++L        WS  ++ GS   +T +   +P+T D
Sbjct: 435 VLERIISDLFPEHPPCDWSQLSNVGSVEGATTTAGIAPVTDD 476


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +2

Query: 137 ETVQQHPHR*LRQRCPSELGIRE--PRQGLHHPECS*QPDHYGSRNT 271
           E + ++ H  +R+  PS    R   PR G   P C   P    SR+T
Sbjct: 237 ENIYKNAHASIRKIPPSRRNPRRRSPRSGGRWPSCRSPPARRRSRST 283


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 103 TADISATPALTASTHDANTTRNFIMTVAFSDRFQ 2
           TAD S++PA ++ TH   T R+ +    F D F+
Sbjct: 236 TADPSSSPAYSSITHYEPTARS-LANNTFVDGFK 268


>AY579078-1|AAT81602.1|  425|Anopheles gambiae neuropeptide F
           receptor protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 313 VLSVADPQLVAXLHGVPTSVMIRLLTTFWMMEPLPWFSYS 194
           ++++A   L+  L  +P + ++ +LT +W M  LP+   S
Sbjct: 80  IVNLAVSDLLLCLVTMPLT-LVEILTKYWPMGRLPFLCKS 118


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +2

Query: 287 KLWVGNG---QHIVRKYFPYNFRLIMAGNFVKLIYR 385
           K+ +GN    +H  R+Y   N    ++G+FV   +R
Sbjct: 426 KINIGNTYAEEHYYRRYLTANLSSDLSGDFVDAFFR 461


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +2

Query: 287 KLWVGNG---QHIVRKYFPYNFRLIMAGNFVKLIYR 385
           K+ +GN    +H  R+Y   N    ++G+FV   +R
Sbjct: 426 KINIGNTYAEEHYYRRYLTANLSSDLSGDFVDAFFR 461


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 465,111
Number of Sequences: 2352
Number of extensions: 8413
Number of successful extensions: 23
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 45668772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)