Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20203
         (508 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-2265|AAF53230.1|  255|Drosophila melanogaster CG16800-P...    29   2.7  
AY102651-1|AAM27480.1|  602|Drosophila melanogaster GH01517p pro...    29   3.6  
AE014297-1927|AAF55121.3|  602|Drosophila melanogaster CG33485-P...    29   3.6  

>AE014134-2265|AAF53230.1|  255|Drosophila melanogaster CG16800-PA
           protein.
          Length = 255

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 101 RGHFSDAGADGEHARREHHEKFHYDS 24
           +GH    G  GEH   E HEK H  S
Sbjct: 78  KGHHDKEGKKGEHGEEEGHEKKHKHS 103


>AY102651-1|AAM27480.1|  602|Drosophila melanogaster GH01517p
           protein.
          Length = 602

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = +2

Query: 146 QQHPHR*LRQRCPSELGIREPRQGLHHPECS*QPDHYGSRNTMEXCYKLWVGNG 307
           QQH    LRQR  +    +  RQ  HH     QP+   S      C +LW G G
Sbjct: 11  QQHQRTNLRQRAAAVATSKARRQRQHHL----QPESTDSPPYSTDCIRLWPGCG 60


>AE014297-1927|AAF55121.3|  602|Drosophila melanogaster CG33485-PA
           protein.
          Length = 602

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = +2

Query: 146 QQHPHR*LRQRCPSELGIREPRQGLHHPECS*QPDHYGSRNTMEXCYKLWVGNG 307
           QQH    LRQR  +    +  RQ  HH     QP+   S      C +LW G G
Sbjct: 11  QQHQRTNLRQRAAAVATSKARRQRQHHL----QPESTDSPPYSTDCIRLWPGCG 60


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,048,251
Number of Sequences: 53049
Number of extensions: 381710
Number of successful extensions: 1508
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1825511424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)