Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20203
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024845-2|AAF60851.1|  324|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z78062-4|CAB01498.2|  341|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z81528-1|CAB04282.1|  345|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF078157-2|AAN84818.1|  176|Caenorhabditis elegans Hypothetical ...    28   4.5  
AF078157-1|AAG24071.1|  235|Caenorhabditis elegans Hypothetical ...    28   4.5  
AF038604-6|AAB92014.2|  243|Caenorhabditis elegans Hypothetical ...    28   4.5  
AC084197-20|AAG23472.1|  270|Caenorhabditis elegans Hypothetical...    27   5.9  

>AC024845-2|AAF60851.1|  324|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.4 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
 Frame = +3

Query: 180 VRQSLEYENQGKGSIIQNVVNNL--IITEVGTPWSXATSC--GSATDSTLSESTSPIT 341
           +R+      QGK S+  N+ ++L  +  E+G+P S +++C   +AT S  S STS  T
Sbjct: 238 IRKQTALRFQGKASV--NLFSDLTAVTNELGSPSSPSSNCVISTATTSIPSTSTSSTT 293


>Z78062-4|CAB01498.2|  341|Caenorhabditis elegans Hypothetical
           protein F16D3.6 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +2

Query: 254 YGSRNTMEXCYKLWVGNGQHIVRKYFP--YNFRLIMAGNFVKLIYRNYNLSLEAR 412
           +G  N  + CY L   NG  +VR +    +NF  I+  NFV L +  +  +++++
Sbjct: 178 FGENNKNDVCYTLRFSNGMELVRIFSTLFFNFAAIIV-NFVILRFVKHFENIQSK 231


>Z81528-1|CAB04282.1|  345|Caenorhabditis elegans Hypothetical
           protein F35E2.1 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 254 YGSRNTMEXCYKLWVGNGQHIVRKYFP--YNFRLIMAGNFVKL 376
           +G  N  + CY L   NG  +VR +    +NF  I+  NFV L
Sbjct: 178 FGENNKNDVCYTLRFSNGMELVRIFSTLFFNFAAIIV-NFVIL 219


>AF078157-2|AAN84818.1|  176|Caenorhabditis elegans Hypothetical
           protein F25E5.8b protein.
          Length = 176

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 89  SDAGADGEHARREHHEKFHYDSCLF 15
           S+ G  G H   EHH K H+   L+
Sbjct: 36  SEEGTSGSHKPEEHHHKEHHGHSLY 60


>AF078157-1|AAG24071.1|  235|Caenorhabditis elegans Hypothetical
           protein F25E5.8a protein.
          Length = 235

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 89  SDAGADGEHARREHHEKFHYDSCLF 15
           S+ G  G H   EHH K H+   L+
Sbjct: 36  SEEGTSGSHKPEEHHHKEHHGHSLY 60


>AF038604-6|AAB92014.2|  243|Caenorhabditis elegans Hypothetical
           protein B0546.5 protein.
          Length = 243

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 254 YGSRNTMEXCYKLWVGNGQHIVRKYFP--YNFRLIMAGNFVKL 376
           +G  N  + CY L   NG  +VR +    +NF  I+  NFV L
Sbjct: 178 FGENNKNDVCYTLRFSNGMELVRIFSTLFFNFAAIIV-NFVIL 219


>AC084197-20|AAG23472.1|  270|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.16 protein.
          Length = 270

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 183 RQSLEYENQGKGSIIQNVVNNLIITEVGTPWSXATSCGSATDSTLSEST 329
           R++  YE   K  +I+  V +L I E+ TP          +   LS ST
Sbjct: 222 RRATAYEENHKAGVIKYYVRDLDICELSTPRPLTAQISPTSAPGLSSST 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,095,303
Number of Sequences: 27780
Number of extensions: 185450
Number of successful extensions: 485
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)