Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20203
(508 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59210.2 68418.m07421 myosin heavy chain-related contains wea... 31 0.59
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea... 31 0.59
At2g18700.1 68415.m02178 glycosyl transferase family 20 protein ... 30 1.0
At2g15490.1 68415.m01772 UDP-glucoronosyl/UDP-glucosyl transfera... 29 1.4
At4g35380.1 68417.m05026 guanine nucleotide exchange family prot... 29 1.8
At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A... 29 2.4
At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A... 29 2.4
At1g01060.2 68414.m00007 myb family transcription factor contain... 28 3.1
At1g01060.1 68414.m00006 myb family transcription factor contain... 28 3.1
At5g07400.1 68418.m00847 forkhead-associated domain-containing p... 27 7.3
At1g63190.1 68414.m07141 hypothetical protein 27 7.3
At5g16270.1 68418.m01900 Rad21/Rec8-like family protein weak sim... 27 9.6
At1g67140.1 68414.m07638 expressed protein 27 9.6
>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, gizzard smooth muscle
(Swiss-Prot:P10587) [Gallus gallus]
Length = 433
Score = 30.7 bits (66), Expect = 0.59
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Frame = +3
Query: 135 EKLY--NSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIITEVGTPWSXATSCG-SAT 305
EKL+ NS L+ Y ++ S ++ENQ K + QNV ++ ++ T + + S G S
Sbjct: 298 EKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLRTEQAGSFSRGPSEF 357
Query: 306 DSTLSESTSPITL 344
++ S T ++L
Sbjct: 358 EANGSHGTDTLSL 370
>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, gizzard smooth muscle
(Swiss-Prot:P10587) [Gallus gallus]
Length = 434
Score = 30.7 bits (66), Expect = 0.59
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Frame = +3
Query: 135 EKLY--NSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIITEVGTPWSXATSCG-SAT 305
EKL+ NS L+ Y ++ S ++ENQ K + QNV ++ ++ T + + S G S
Sbjct: 299 EKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLRTEQAGSFSRGPSEF 358
Query: 306 DSTLSESTSPITL 344
++ S T ++L
Sbjct: 359 EANGSHGTDTLSL 371
>At2g18700.1 68415.m02178 glycosyl transferase family 20 protein /
trehalose-phosphatase family protein similar to
trehalose-6-phosphate synthase SL-TPS/P [Selaginella
lepidophylla] GI:4100325; contains Pfam profiles
PF00982: Glycosyltransferase family 20, PF02358:
Trehalose-phosphatase
Length = 862
Score = 29.9 bits (64), Expect = 1.0
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -3
Query: 284 SXTPWCSDFRNDQVVNYILDDGALALVLVFQALTDSAVVVTGEDAVVQFLLEFF 123
S WC +F ND + + D +V+ ++ V+ + ++ V QFLLE F
Sbjct: 68 SSNKWCFEFDNDSLYLQLKDGFPPETEVVYVGSLNADVLPSEQEDVSQFLLEKF 121
>At2g15490.1 68415.m01772 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 484
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +3
Query: 147 NSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIITEVGTPWSXATSCGSATDSTLSES 326
N + TG+ + + + E N+GKG II+ ++I + T CG +STL
Sbjct: 326 NQVGTGENEDWLPKGFEERNKGKGLIIRGWAPQVLILDHKAIGGFVTHCG--WNSTLEGI 383
Query: 327 TSPITLDSSWP 359
+ + + +WP
Sbjct: 384 AAGLPM-VTWP 393
>At4g35380.1 68417.m05026 guanine nucleotide exchange family protein
similar to guanine nucleotide exchange factor [Homo
sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
domain
Length = 1706
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 219 SIIQNVVNNLIITEVGTPWSXATSCGSATDST 314
+I++ +VN L+ T +G P +T+ A DST
Sbjct: 450 NILERIVNGLLKTALGPPTGSSTTLSPAQDST 481
>At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20)
Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
thaliana]; similar to cytochrome P450 71A4, Solanum
melongena, PIR2:S36805
Length = 390
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 138 KLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLII 254
K+ + IL+G D A EY Q K IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141
>At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20)
Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
thaliana]; similar to cytochrome P450 71A4, Solanum
melongena, PIR2:S36805
Length = 497
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 138 KLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLII 254
K+ + IL+G D A EY Q K IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141
>At1g01060.2 68414.m00007 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA LATE ELONGATED HYPOCOTYL MYB
transcription factor GI:3281845
Length = 645
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +3
Query: 165 DYDSAVRQSLEYENQGKGSIIQNVVNNLIITEVGTPWSXATSCGSATDSTLSESTSP 335
DY S ++ S + N +++QN + T + W A S G++ DS+ S+SP
Sbjct: 286 DYRSFLQISSTFSNLIMSTLLQNPAAHAAATFAASVWPYA-SVGNSGDSSTPMSSSP 341
>At1g01060.1 68414.m00006 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA LATE ELONGATED HYPOCOTYL MYB
transcription factor GI:3281845
Length = 645
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +3
Query: 165 DYDSAVRQSLEYENQGKGSIIQNVVNNLIITEVGTPWSXATSCGSATDSTLSESTSP 335
DY S ++ S + N +++QN + T + W A S G++ DS+ S+SP
Sbjct: 286 DYRSFLQISSTFSNLIMSTLLQNPAAHAAATFAASVWPYA-SVGNSGDSSTPMSSSP 341
>At5g07400.1 68418.m00847 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 1084
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 193 WNTRTKARAPSSRM*LTT*SLRKSEHHGVL 282
W+ R + APS ++ T K+ HHGVL
Sbjct: 835 WSNREEREAPSIKIIFPTIERVKNGHHGVL 864
>At1g63190.1 68414.m07141 hypothetical protein
Length = 217
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 423 DPXNERLAYRDW*GKEQRP 479
DP ER AYRDW +E P
Sbjct: 22 DPGYERPAYRDWTKEEDEP 40
>At5g16270.1 68418.m01900 Rad21/Rec8-like family protein weak
similarity to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; contains Pfam profiles PF04824:
Conserved region of Rad21 / Rec8 like protein, PF04825:
N terminus of Rad21 / Rec8 like protein; supporting cDNA
gi|18157648|gb|AF400129.1|AF400129
Length = 1031
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 242 VNYILDDGALALVLVFQALTDSAVVVTGEDAVVQF 138
VNY+ DD + AL+ V QA +AV + E++ +
Sbjct: 71 VNYLFDDCSEALLKVKQAFRSAAVDLPPEESTAPY 105
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -1
Query: 352 DESKVIGEVLSDNVLSVADPQLVAXLHGVPTSVMIRLLTTFWMMEPLPW 206
D VI E + DN+ + D + + + + S +IRLL P W
Sbjct: 994 DPVSVIDEQIEDNLFQMLDEETDSEIGNLIRSTLIRLLYATCPSRPSRW 1042
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,500,597
Number of Sequences: 28952
Number of extensions: 168918
Number of successful extensions: 467
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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