Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20202
(590 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 28 1.2
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.7
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi... 27 2.7
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 3.6
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 26 3.6
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom... 26 3.6
SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.3
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 25 8.3
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 25 8.3
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 25 8.3
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 310 FERKTGCK--SCIECASLAHYSTVVSSEKKSLTYAP 209
F T CK +C+ CA +S++ +S+ KS Y P
Sbjct: 177 FHTSTDCKRPTCMTCAIDDMFSSIYNSKNKSTFYGP 212
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 26.6 bits (56), Expect = 2.7
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = -2
Query: 388 ISNNDEILECIFKKFTKYDGLQKLLYFERKTGCKSCIECASL---AHYSTVVSSEKKSLT 218
+SN D L K +GLQ Y KTG + C+S+ A++S+ E++S
Sbjct: 55 VSNPDLSLPSSPVKQILRNGLQNSKYGSHKTGLERSASCSSIDASANHSSTTYREQRSYL 114
Query: 217 YAPPIRILHSLDNVISMSLQINSFNRKL 134
+ + +S +++S N +
Sbjct: 115 MEEGLDTQPIVPREVSSGRELDSTNHTI 142
>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +2
Query: 275 LNTAFTTGFPLKIQ----EFLETVVFRELFKNAFKNFVIIAYSECWEI 406
+NT G +K+Q FL+ R + +NA +NF + S+ +EI
Sbjct: 125 INTDIAQGSYVKLQPQSVNFLDITDHRAVLENALRNFSTLTKSDIFEI 172
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 355 KCIQEFRHYCLFRMLGNFLYYSRLTMFIYVYYFPF 459
+CI++F HYC F +G + +S F ++ F
Sbjct: 134 RCIRKFDHYCSF--VGKDVCFSNQKFFYQFLFYGF 166
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 585 PFFKKMAFKRHLSNAVSNSL*AT 517
PFFKK +K HL VS+ AT
Sbjct: 41 PFFKKERYKHHLETNVSSHQSAT 63
>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 26.2 bits (55), Expect = 3.6
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +3
Query: 270 AHSIQLLQPVFRSKYKSFWRPSYFVNFLKMHSRISSLLLIQNVGKFSVLFT 422
AH + + V R K W YFV L M LI VGK+ FT
Sbjct: 230 AHKVVITNLVVRPSCKFPWTYIYFVECLGMEKH-----LIDRVGKYCDTFT 275
>SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -2
Query: 256 YSTVVSSEKKSLTYAPPIRI-LHSLDNVISMS 164
YS+ SSEK+ + + P +R+ L SL N+ +S
Sbjct: 115 YSSSESSEKELIWFQPKMRVFLQSLSNMSYLS 146
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 330 PSYFVNFLKMHSRISSLL 383
PSY + +L HSR S LL
Sbjct: 272 PSYIIKYLMSHSRRSKLL 289
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Frame = +2
Query: 275 LNTAFTTGFPLKIQEFLETVVFRE----LFKNAFKNFVI 379
L TAF P++IQEF++TV+ FK A ++F+I
Sbjct: 988 LVTAFPHLQPIQIQEFVQTVLALNQDSIKFKLALRDFLI 1026
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/31 (32%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 403 NFLYYSRLTMF-IYVYYFPFFLIXLXGPQSC 492
+F+++S LT + V+YFP + + + G ++C
Sbjct: 289 SFVFWSVLTSLGLLVWYFPLWHMGISGYEAC 319
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,798
Number of Sequences: 5004
Number of extensions: 43343
Number of successful extensions: 116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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