Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20202
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24982| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_24982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 433 TWSVVNNTENFPTF*ISNNDEILECIFKKFTKYDGLQKLLYF 308
           TW  +N   N PT   ++ +E LEC  ++F   D  +  + F
Sbjct: 141 TWDTLNPARNTPTVCFTSKEEFLEC-QEEFVNADDRESSIVF 181


>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1176

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 372 KFLNAFLKSSRNTTVSKNSCILSGKPVVKAVLSAPP 265
           K+L+ F+KS+R   +++NS   S +    A  ++PP
Sbjct: 866 KWLDDFMKSAREKEIAENSRYASTQAATSAPYASPP 901


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,740,180
Number of Sequences: 59808
Number of extensions: 299686
Number of successful extensions: 832
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)