Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20202
(590 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039046-10|AAB94220.2| 233|Caenorhabditis elegans Serpentine r... 32 0.27
AF016662-3|AAB66057.1| 461|Caenorhabditis elegans Hypothetical ... 31 0.61
AF047665-3|AAC04456.3| 566|Caenorhabditis elegans Hypothetical ... 31 0.81
Z81050-5|CAB02855.2| 367|Caenorhabditis elegans Hypothetical pr... 30 1.1
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 28 5.7
AC024817-38|AAF59578.1| 608|Caenorhabditis elegans Hypothetical... 28 5.7
Z47811-4|CAD57701.1| 422|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z32681-3|CAD88217.1| 685|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z32681-2|CAA83607.1| 687|Caenorhabditis elegans Hypothetical pr... 27 7.5
AF173373-1|AAD51973.1| 687|Caenorhabditis elegans transmembrane... 27 7.5
>AF039046-10|AAB94220.2| 233|Caenorhabditis elegans Serpentine
receptor, class j protein23, isoform a protein.
Length = 233
Score = 32.3 bits (70), Expect = 0.27
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +3
Query: 192 CNILIGGA*VKLFFSEDTTVL*WAKEAHSIQLLQPVFRSKYKSFWRPSYFVNFLKMH 362
C + IG + + DT + + E+ + ++ ++RS F+RPS ++ L+ H
Sbjct: 150 CYVYIGADMERKLYMHDTIMDVYGVESTKLNMIVALYRSSLSHFFRPSIRISILRSH 206
>AF016662-3|AAB66057.1| 461|Caenorhabditis elegans Hypothetical
protein C33C12.5 protein.
Length = 461
Score = 31.1 bits (67), Expect = 0.61
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 363 NAFLKSSRNTTVSKNSCILSGKPVVKAVLS-APPWPTTVP 247
N+ + S KN CIL+GK V + +S +PP TT P
Sbjct: 22 NSLNQDSTKIACVKNDCILNGKQVEEICISESPPKTTTTP 61
>AF047665-3|AAC04456.3| 566|Caenorhabditis elegans Hypothetical
protein T23E1.1 protein.
Length = 566
Score = 30.7 bits (66), Expect = 0.81
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 245 NGTVVGQGGALNTAFTTGFPLKIQEFLETVVFRELFKNAFKN 370
NGT++ + L T G P KI+ V R+ F N F N
Sbjct: 132 NGTILAEASKLETPIEPGIPTKIESEQFVVFCRDPFGNHFYN 173
>Z81050-5|CAB02855.2| 367|Caenorhabditis elegans Hypothetical
protein C50B6.6 protein.
Length = 367
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 355 KCIQEFRHYCLFRMLGNFLYYSRLTMFIY-VYYFPF 459
K ++E+R Y L+ LGN L+ +++F+ V Y P+
Sbjct: 52 KTLKEYRKYLLWHTLGNLLFELYISLFMLPVTYLPY 87
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 27.9 bits (59), Expect = 5.7
Identities = 18/96 (18%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Frame = -2
Query: 415 NTENFPTF*ISNNDEILECIFKKFTKYDGLQKLLYFERKTGCKSCIECASLAHYSTVVSS 236
N F T ++++I F+ Y + ++F++ CK +E + Y+T
Sbjct: 464 NVHKFATKLQKHSEKIFSTQFETIVSYQDFSQKIHFKKDLVCKIEVEGRFILAYATPEDV 523
Query: 235 EKKSLTYAPPIRILHSLDNVISMSL--QINSFNRKL 134
E++ + P + + +V+ + +I R+L
Sbjct: 524 EQEKIIPTVPSQDVQKDSDVLKQEVKSKIRQIEREL 559
>AC024817-38|AAF59578.1| 608|Caenorhabditis elegans Hypothetical
protein Y54G2A.20 protein.
Length = 608
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -2
Query: 304 RKTGCKSCIECASLAHYSTVVSSEKKSLTYAPPIRILHSLDNV 176
R T K CI C + AHY +++ ++ + IR++ L+++
Sbjct: 558 RITDWKRCILCKNPAHYDCTLNAHAPTILNSSFIRLIFRLNSI 600
>Z47811-4|CAD57701.1| 422|Caenorhabditis elegans Hypothetical
protein K02C4.5 protein.
Length = 422
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 354 LKSSRNTTVSKNSCILSGKPVVKAVLSAPPWPTTVPLYLQ 235
L+SSR T S CI + V+ S PP P + + Q
Sbjct: 152 LRSSRKNTSSSLECIEKDERVLAGSKSTPPTPPAIRSHAQ 191
>Z32681-3|CAD88217.1| 685|Caenorhabditis elegans Hypothetical
protein F56F3.2b protein.
Length = 685
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +3
Query: 276 SIQLLQPVFRSKYKSFWRPSYFVNFLKMHSRISSLLLIQNVGKFSVLFTT 425
++ + +P+ + S +P+Y ++ M++ IS+ LL V F +F T
Sbjct: 610 ALVVAEPIILYFFSSLNKPAYATHWSTMYTAISTALLAYFVAMFLDIFVT 659
>Z32681-2|CAA83607.1| 687|Caenorhabditis elegans Hypothetical
protein F56F3.2a protein.
Length = 687
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +3
Query: 276 SIQLLQPVFRSKYKSFWRPSYFVNFLKMHSRISSLLLIQNVGKFSVLFTT 425
++ + +P+ + S +P+Y ++ M++ IS+ LL V F +F T
Sbjct: 612 ALVVAEPIILYFFSSLNKPAYATHWSTMYTAISTALLAYFVAMFLDIFVT 661
>AF173373-1|AAD51973.1| 687|Caenorhabditis elegans transmembrane
protein NDG-4 protein.
Length = 687
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +3
Query: 276 SIQLLQPVFRSKYKSFWRPSYFVNFLKMHSRISSLLLIQNVGKFSVLFTT 425
++ + +P+ + S +P+Y ++ M++ IS+ LL V F +F T
Sbjct: 612 ALVVAEPIILYFFSSLNKPAYATHWSTMYTAISTALLAYFVAMFLDIFVT 661
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,129,044
Number of Sequences: 27780
Number of extensions: 249057
Number of successful extensions: 796
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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