Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20202
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.56 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    25   0.73 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    25   0.73 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   3.9  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   5.2  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   6.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.0  

>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 249 VL*WAKEAHSIQLLQPVFRSKYKSFWRPSYFVNFLKMHSRISSLL 383
           +L  AK    ++LL+     +Y S W   YF+N   +  RI +L+
Sbjct: 207 ILRLAKLLSLVRLLRLSRLVRYVSQWEEVYFLNMASVFMRIFNLI 251


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 433 TWSVVNNTENFPTF*ISNNDEILECIFKKFTKYDGLQKLLYFE 305
           TW  VN  EN+ T  ++   +     F  F K+  L+K  YF+
Sbjct: 436 TWLRVN--ENYKTVNLAAEKKDKNSFFNMFKKFASLKKSPYFK 476


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 433 TWSVVNNTENFPTF*ISNNDEILECIFKKFTKYDGLQKLLYFE 305
           TW  VN  EN+ T  ++   +     F  F K+  L+K  YF+
Sbjct: 436 TWLRVN--ENYKTVNLAAEKKDKNSFFNMFKKFASLKKSPYFK 476


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 590 HDHSSKRWPLKDTSAMLLA 534
           H H SK W  +D  A L A
Sbjct: 404 HHHGSKSWTQEDMDAALEA 422


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 364 ECIFKKFTKYD 332
           EC+ KKF  YD
Sbjct: 64  ECLIKKFNAYD 74


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 364 ECIFKKFTKYD 332
           EC+ KKF  YD
Sbjct: 64  ECLIKKFNGYD 74


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 297 PVVKAVLSAPP 265
           PV+K VL APP
Sbjct: 619 PVLKRVLQAPP 629


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,356
Number of Sequences: 438
Number of extensions: 2839
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)