Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20201
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    26   1.4  
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz...    25   2.5  
SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38 |...    25   3.3  
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom...    23   7.7  

>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 76  SVSKQYRSDYVYNKDTNAFYKLHTD 150
           S+   Y  DY  +K+  A Y +HTD
Sbjct: 76  SLKAYYGMDYYLHKNVKAVYVIHTD 100


>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 181 KSSWRPIS*RCQCVVCKTRW 122
           +S+  P++  C+C VC  RW
Sbjct: 271 RSADEPMTTFCECTVCGNRW 290


>SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +1

Query: 31  FICFCFLAIASAPPPSVSKQYRS--DYVYNKDTNAFY-KLHTDSAKI 162
           FIC  +  +  AP   + +QY S  ++ Y +   AFY +L  D  ++
Sbjct: 73  FICLLYKLLQIAPEKEIIQQYLSIPEFKYLRALAAFYVRLTWDDVEV 119


>SPBC32F12.02 |rec14||recombination protein
           Rec14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 103 YVYNKDTNAFYKLHTDSAKIWDAKSSCTTEGAQ 201
           YV+N +TN F  L  ++    +  SSC +   Q
Sbjct: 84  YVWNPETNEFRDLGNNAQHPSECWSSCISPDGQ 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,200,434
Number of Sequences: 5004
Number of extensions: 20426
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)