Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20201
(306 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0051 + 10199702-10199839,10199869-10200642,10202481-102030... 28 1.7
01_06_1393 - 36999631-36999723,37000244-37000393,37000413-370005... 27 2.2
11_05_0006 + 18316064-18316258,18316458-18316507,18317826-183178... 27 3.8
05_01_0114 + 770049-770286,771007-771605 27 3.8
02_05_0385 - 28506326-28506891,28506993-28507405,28507496-285077... 27 3.8
06_01_0277 - 2039129-2040280 26 5.1
12_02_0931 + 24512496-24512567,24512705-24512806,24512939-245129... 26 6.7
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600... 26 6.7
05_03_0192 - 9525945-9526210,9526305-9526539 25 8.9
02_05_1034 - 33649634-33649651,33649699-33649811,33649938-336500... 25 8.9
>04_03_0051 +
10199702-10199839,10199869-10200642,10202481-10203077,
10237046-10237159
Length = 540
Score = 27.9 bits (59), Expect = 1.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 193 GAQLXVPASEQDIIQLHSMFKDXQIWG 273
G + VPA ++ +H+M +D + WG
Sbjct: 389 GGRYAVPAGTMLLVNVHAMHRDARFWG 415
>01_06_1393 -
36999631-36999723,37000244-37000393,37000413-37000500,
37001362-37001465,37003115-37003192,37004247-37004369,
37004508-37004615
Length = 247
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 180 LHH*GSPVXGAGFRTGYNSASFDVQ-RFXD--LGNYVWVDE 293
L H P+ GA F T + FDV R D L + +W+DE
Sbjct: 176 LRHQPPPIQGAEFETADSMTPFDVAVRILDNQLRSLMWIDE 216
>11_05_0006 +
18316064-18316258,18316458-18316507,18317826-18317886,
18317972-18318007,18318852-18318902,18321271-18321375,
18321508-18321600,18321698-18321841
Length = 244
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 23 RVLLFVSAFWRLPVPPLR 76
RVL F AFWR P P R
Sbjct: 96 RVLYFEQAFWRSPEKPFR 113
>05_01_0114 + 770049-770286,771007-771605
Length = 278
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 43 CFLAIASAPPPSVSKQYRSDY-VYNKDTNAFYKLHTDSAK 159
C+ A A A PPS ++ +DY ++ D +YK D+++
Sbjct: 239 CYDAAAMASPPSPVWEFCTDYSLWRIDDEEYYKKMLDASQ 278
>02_05_0385 -
28506326-28506891,28506993-28507405,28507496-28507743,
28507820-28508480,28508572-28509498,28509588-28509847,
28509943-28510143,28515547-28515633,28516200-28516375,
28516465-28516519,28516623-28516910
Length = 1293
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -3
Query: 103 SRXGIASKHSEGGHWQSPKSRNK*KHSSFRRD 8
SR G H EGGH P S K +S R D
Sbjct: 689 SRYGTVEAHDEGGHKSKPVSMKK-LYSMIRPD 719
>06_01_0277 - 2039129-2040280
Length = 383
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 192 GSPVXG-AGFRTGYNSASFDVQRFXDLGNYVWVDEY 296
G+P G +G FDV R +G +W+D Y
Sbjct: 296 GAPSMGNSGTEEALEFFMFDVDRVLRVGGLLWIDSY 331
>12_02_0931 +
24512496-24512567,24512705-24512806,24512939-24512984,
24513292-24513355,24513997-24514348,24514497-24514749,
24515069-24515311,24515399-24515518,24515710-24516158
Length = 566
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 40 FCFLAIASAPPPSVSKQYRSDYVYNKDTNAFY 135
FC L + PP S+S+ S Y+Y +D F+
Sbjct: 282 FCNLMVPIGPP-SLSRSCMSPYLYIQDEKPFH 312
>03_05_1124 +
30559633-30559674,30559781-30559890,30559973-30560030,
30560455-30560718,30560803-30560940,30561264-30561315,
30561525-30561604,30561929-30561988,30562084-30562164,
30562299-30562376,30563548-30563676,30563896-30564039,
30564145-30564290,30564402-30564558,30564657-30564715,
30564800-30564959,30565054-30565203,30565309-30565445,
30565531-30565677,30565995-30566052,30566417-30566518,
30566590-30566627,30566846-30566972,30567053-30567223,
30567313-30567444,30567575-30567681,30567815-30567875,
30567970-30568147,30568245-30568450,30568781-30568879,
30569021-30569236,30569333-30569472,30569559-30569660,
30569747-30569861,30570129-30570194,30570323-30570480,
30570594-30570690,30570931-30571137,30571435-30571505,
30571648-30571747,30571836-30571892,30571969-30572025,
30572108-30572188,30572319-30572401,30572504-30572651
Length = 1722
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +1
Query: 43 CFLAIASAPPPSVSKQYRSD---YVYNKDTNAFYKLHTDSAK 159
CF + SAPP V K D + Y TN + + D A+
Sbjct: 576 CFYMLCSAPPEDVKKFKVGDPRSFHYLNQTNCYEVANVDDAR 617
>05_03_0192 - 9525945-9526210,9526305-9526539
Length = 166
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 73 EGGHWQSPKSRNK 35
+GGHW SP+SR K
Sbjct: 20 QGGHWVSPESRWK 32
>02_05_1034 -
33649634-33649651,33649699-33649811,33649938-33650029,
33650212-33650321,33650444-33650517,33650877-33650950,
33651091-33651158
Length = 182
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 49 LAIASAPPPSVSKQYRSDYVYNKDTNAFYKLHTDSAKIWDA 171
+A +S+PPP + S +N+D + FY D +I+DA
Sbjct: 1 MASSSSPPPPPQIRCAS---FNQDNSLFYVGTKDGFRIFDA 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,118,422
Number of Sequences: 37544
Number of extensions: 142586
Number of successful extensions: 433
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -