Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20201
         (306 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47656| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.99 
SB_41371| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.99 
SB_3713| Best HMM Match : Lectin_C (HMM E-Value=6.6e-10)               28   1.3  
SB_46060| Best HMM Match : Astacin (HMM E-Value=1.8e-17)               26   5.3  
SB_47963| Best HMM Match : Ribosomal_L23eN (HMM E-Value=1.7)           26   7.0  
SB_47654| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_41290| Best HMM Match : Pox_RNA_Pol_19 (HMM E-Value=9.7)            26   7.0  
SB_33389| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)                25   9.2  
SB_24713| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.2  

>SB_47656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 109 IRSRXGIASKHSEGGHWQSPKSRNK*KHSS 20
           IR+R G+A +  + G   SPK+R K K S+
Sbjct: 181 IRARHGLAPRDEKSGKGPSPKAREKAKKSA 210


>SB_41371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 109 IRSRXGIASKHSEGGHWQSPKSRNK*KHSS 20
           IR+R G+A +  + G   SPK+R K K S+
Sbjct: 181 IRARHGLAPRDEKSGKGPSPKAREKAKKSA 210


>SB_3713| Best HMM Match : Lectin_C (HMM E-Value=6.6e-10)
          Length = 202

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 40  FCFLAIASAPPPSVSKQYRSDYVYNKDTNAFYKLHTDSAKIW-DAKSSCTTEGAQL 204
           +C L +  A    V++   + +  + D NA Y L  D  K W DA+ SC  +GA+L
Sbjct: 86  YCGLGVVGAV---VTQGCPAGWQRSPDGNACYGLTLDK-KTWPDARDSCRAQGAEL 137


>SB_46060| Best HMM Match : Astacin (HMM E-Value=1.8e-17)
          Length = 339

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 10  HVEMKSAFICFCFLAIASAPPPSVSKQYRSDYVYNKDTNAFYKLHTDSAKI-WDAKSSCT 186
           H+ +  A I  C  A     PP V+K  +SD+  N D+N    ++  S K  W  +S  T
Sbjct: 234 HIAITIA-IAHCDNAEQETSPPPVTKPPQSDFNCNFDSNMCSFVNMGSDKFDWTRRSGGT 292


>SB_47963| Best HMM Match : Ribosomal_L23eN (HMM E-Value=1.7)
          Length = 110

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 100 RXGIASKHSEGGHWQSPKSRNK 35
           +  +A+K ++GGHW + K RNK
Sbjct: 54  KAALAAKATKGGHW-ATKGRNK 74


>SB_47654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 109 YNKDTNAFYKLHTDSAKIWDAKSSCTTEGAQL 204
           Y   TNA +KL T +     A S+CT EGA+L
Sbjct: 7   YQFGTNA-WKLFTRNLNWEAAVSACTAEGAEL 37


>SB_41290| Best HMM Match : Pox_RNA_Pol_19 (HMM E-Value=9.7)
          Length = 157

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 215 AGTXNWAPSVVQE 177
           AGT NW P V+QE
Sbjct: 23  AGTENWLPEVIQE 35


>SB_33389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = +1

Query: 40  FCFLAIASAPPPSVSKQYRSDYVYNKDTNAFYKLH----TDSAKIWDAKSSCTTEGAQLX 207
           F  L   S   P  +K+ ++  +Y  +   F   H        +IW AKSS   +G  + 
Sbjct: 44  FIILPQKSHQAPCETKKQKTS-LYKDEREEFLTAHKWLKASGEEIWIAKSSAGAKGEDIC 102

Query: 208 VPASEQDII 234
           + +S ++I+
Sbjct: 103 LSSSPKEIL 111


>SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)
          Length = 1042

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 106 VYNKDTNAFYKLHTDSAKIWDAKSSCTTEG 195
           V+N + N F +   +  K W   S  TTEG
Sbjct: 632 VHNHEENVFIQQQHNGEKSWVGLSDVTTEG 661


>SB_24713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 109 IRSRXGIASKHSEGGHWQSPKSRNK*K 29
           IR+R G+A +  + G   SP++R K K
Sbjct: 164 IRARHGLAPRDEKSGKGPSPEAREKAK 190


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,162,404
Number of Sequences: 59808
Number of extensions: 162221
Number of successful extensions: 346
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 377252670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)