Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20201
(306 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10370.1 68417.m01702 DC1 domain-containing protein contains ... 29 0.82
At3g12820.1 68416.m01599 myb family transcription factor (MYB10)... 26 4.3
At1g20740.1 68414.m02598 expressed protein ; expression supporte... 26 4.3
At1g32330.1 68414.m03983 heat shock transcription factor family ... 26 5.7
At5g47480.1 68418.m05863 expressed protein 25 7.6
At4g39270.2 68417.m05561 leucine-rich repeat transmembrane prote... 25 7.6
At4g39270.1 68417.m05562 leucine-rich repeat transmembrane prote... 25 7.6
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 25 7.6
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 25 7.6
At1g59500.1 68414.m06680 auxin-responsive GH3 family protein sim... 25 7.6
>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 687
Score = 28.7 bits (61), Expect = 0.82
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 49 LAIASAPPPSVSKQYRSDYVYNKDTNAFYKLHTDSAKIWDAKSSCTT 189
L +A+ P + ++ D + K T FY+ HTD I+ C +
Sbjct: 427 LVVATRGPGNEEGTFQCDACHRKGTGFFYEHHTDQENIFMLDIHCAS 473
>At3g12820.1 68416.m01599 myb family transcription factor (MYB10)
similar to myb factor GI:1945279 from [Oryza sativa]
Length = 239
Score = 26.2 bits (55), Expect = 4.3
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +1
Query: 181 CTTEGAQLXVPASEQDIIQLHSMFKDXQIWGTM 279
C + +Q+ P S+ D +Q H D + W +
Sbjct: 187 CLFDDSQVPPPISKPDSLQTHGKSSDHEFWSRL 219
>At1g20740.1 68414.m02598 expressed protein ; expression supported
by MPSS
Length = 266
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 70 PPSVSKQYRSDYVYNKDTNAFYKLHTDSA 156
P +K +DY+ NK+T AF+ + D A
Sbjct: 102 PEDFAKSSAADYIRNKNTAAFHLIVADIA 130
>At1g32330.1 68414.m03983 heat shock transcription factor family
protein contains Pfam profile: PF00447 HSF-type
DNA-binding domain
Length = 485
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 58 ASAPPPSVSKQYRSDYVYNKDTNAFYKLHTDSAKIW 165
++APPP +SK Y +N D+ + + +S +W
Sbjct: 32 SNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVW 67
>At5g47480.1 68418.m05863 expressed protein
Length = 1350
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = +1
Query: 58 ASAPPPSVSKQYRSDYVYNKDTNAFYKLHTDSAKIWDAKSSCTTEGAQLXVPASE 222
A+ PPP S +RS+ + +++ + + S+ W + S +E + P S+
Sbjct: 1121 AALPPPPTSVPFRSNSLGHENKSEIKNEMSPSSGSWSSGSPTPSENSPGIPPVSQ 1175
>At4g39270.2 68417.m05561 leucine-rich repeat transmembrane protein
kinase, putative receptor protein kinase erecta,
Arabidopsis thaliana
Length = 694
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 302 FSVFIHPNIVPQIXKSL 252
FS F HP I+P + KSL
Sbjct: 549 FSRFAHPRIIPFVGKSL 565
>At4g39270.1 68417.m05562 leucine-rich repeat transmembrane protein
kinase, putative receptor protein kinase erecta,
Arabidopsis thaliana
Length = 864
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 302 FSVFIHPNIVPQIXKSL 252
FS F HP I+P + KSL
Sbjct: 549 FSRFAHPRIIPFVGKSL 565
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative
(SYD) similar to transcriptional activator HBRM [Homo
sapiens] GI:414117; contains Pfam profiles PF00271:
Helicase conserved C-terminal domain, PF00176: SNF2
family N-terminal domain; identical to cDNA putative
chromatin remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 25.4 bits (53), Expect = 7.6
Identities = 21/77 (27%), Positives = 31/77 (40%)
Frame = +1
Query: 76 SVSKQYRSDYVYNKDTNAFYKLHTDSAKIWDAKSSCTTEGAQLXVPASEQDIIQLHSMFK 255
S K+ R + + D N DS KI D T E +++ +P + DI LH
Sbjct: 181 SSGKRKRGESSLSWDQNMDNSQIFDSHKIDDQ----TGEVSKIEMPGNSGDIRNLHVGLS 236
Query: 256 DXQIWGTMFGWMNTEKT 306
GW ++E T
Sbjct: 237 SDAFTTPQCGWQSSEAT 253
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative
(SYD) similar to transcriptional activator HBRM [Homo
sapiens] GI:414117; contains Pfam profiles PF00271:
Helicase conserved C-terminal domain, PF00176: SNF2
family N-terminal domain; identical to cDNA putative
chromatin remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 25.4 bits (53), Expect = 7.6
Identities = 21/77 (27%), Positives = 31/77 (40%)
Frame = +1
Query: 76 SVSKQYRSDYVYNKDTNAFYKLHTDSAKIWDAKSSCTTEGAQLXVPASEQDIIQLHSMFK 255
S K+ R + + D N DS KI D T E +++ +P + DI LH
Sbjct: 181 SSGKRKRGESSLSWDQNMDNSQIFDSHKIDDQ----TGEVSKIEMPGNSGDIRNLHVGLS 236
Query: 256 DXQIWGTMFGWMNTEKT 306
GW ++E T
Sbjct: 237 SDAFTTPQCGWQSSEAT 253
>At1g59500.1 68414.m06680 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 597
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +1
Query: 73 PSVSKQYRSDYVYNKDTNAFYKLHTDSAKIWDAKSSCTTE 192
P+++ Y+SDY D+++ Y ++ D+ S T+
Sbjct: 172 PALTSYYKSDYFRTSDSDSVYTSPKEAILCCDSSQSMYTQ 211
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,318,578
Number of Sequences: 28952
Number of extensions: 107596
Number of successful extensions: 281
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 311361520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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