Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20200
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c...    25   3.0  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    24   9.1  

>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 50  FDLTGATRAKVEIVLPNERCLSYEV 124
           FDL+GAT   + I+L  +  L Y+V
Sbjct: 344 FDLSGATSVFIRILLDKKYALPYKV 368


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 192 KRNVEPAASTIKYXXXIRDTNSKSKSSXYEGQLEFQFKNKGQS 320
           ++NV P  S++K     RD N ++  + Y   +  QF+ +  S
Sbjct: 481 QQNV-PQMSSVKKDTPTRDANMRTSKAPYIQNIPNQFQRRAYS 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,407,617
Number of Sequences: 5004
Number of extensions: 23504
Number of successful extensions: 41
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)