Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20200
         (379 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0109 + 20202629-20205452,20206354-20206578,20207208-202080...    31   0.40 
06_02_0244 - 13445023-13445400,13445495-13446823                       30   0.69 
11_01_0401 - 3020606-3020932,3021480-3021626,3021711-3021878,302...    27   3.7  
07_03_1027 - 23371826-23372006,23372110-23372171,23372595-233743...    26   8.6  

>11_06_0109 + 20202629-20205452,20206354-20206578,20207208-20208091,
            20208692-20208814
          Length = 1351

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = +2

Query: 14   KNFELNIHLEGNFDLTGATRAKVEIV--LPNE-RCLSYEVNRXIAVNN 148
            K+ ELN H EG+FDL G   ++ ++   +P++  CL   VN  ++ N+
Sbjct: 1115 KHQELNYHAEGSFDLVGIDLSQNQLTGGIPDQVTCLDGLVNLNLSSNH 1162


>06_02_0244 - 13445023-13445400,13445495-13446823
          Length = 568

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +2

Query: 14  KNFELNIHLEGNFDLTGATRAKVEIVLPNERC-LSYEVNRXIAVNNAGLYNGFXKVLISD 190
           +N +   H        GA  A VE ++ N +  LS EV R I+   AGL NG+  V+ ++
Sbjct: 214 ENLQNEAHAVNPAKPAGARPALVEPIIVNHKVKLSLEVMRMISSAIAGLENGYLPVMSAE 273


>11_01_0401 -
           3020606-3020932,3021480-3021626,3021711-3021878,
           3021960-3022218,3024469-3024522,3025200-3025375
          Length = 376

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 30  ISIWKVISI*PEQLVPKWKSFCQMK 104
           + IW  +   PE+L  KW SF Q K
Sbjct: 297 VDIWNWLRAVPEKLQGKWNSFIQWK 321


>07_03_1027 -
           23371826-23372006,23372110-23372171,23372595-23374335,
           23374609-23374704,23374967-23375043,23376807-23377307
          Length = 885

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 110 DTFHLAERFPLWHELLRLNRNYLPNGYLVRSSF 12
           DTF L+   P++ E   + R  + +GY +++ F
Sbjct: 404 DTFTLSTVLPIFAECADIKRGMVVHGYAIKNGF 436


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,944,349
Number of Sequences: 37544
Number of extensions: 145909
Number of successful extensions: 297
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)