Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20200
         (379 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48509| Best HMM Match : DUF352 (HMM E-Value=2.4)                    31   0.41 
SB_40989| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  

>SB_48509| Best HMM Match : DUF352 (HMM E-Value=2.4)
          Length = 268

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +3

Query: 156 SITASPKY*SRMKRNVEPAASTIKYXXXIRDTNSKSKSSXYEGQLEFQFKNKGQSKDLKN 335
           +IT    Y +R K N E A + +K     R   S+ ++  +  Q     K KG+    KN
Sbjct: 120 AITGEGGYATRSKSNWEKAITFVKLAVQNRPQQSEEENKTFVTQQVTSKKRKGRKASPKN 179

Query: 336 XFTLRNLP 359
             T  +LP
Sbjct: 180 PETSTSLP 187


>SB_40989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -3

Query: 128 D*LHKTDTFHLAERFPLW--HELLRLNRNYLPNGYLV 24
           D L+KT T++L  R PL+  H +  +  + L NG++V
Sbjct: 61  DTLYKTGTWYLISRHPLYNGHVVSHITTHSLYNGHVV 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,267,243
Number of Sequences: 59808
Number of extensions: 162883
Number of successful extensions: 301
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)