Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20200
         (379 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    23   2.8  
DQ974172-1|ABJ52812.1|  409|Anopheles gambiae serpin 13 protein.       23   3.7  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         22   8.6  
AY028783-1|AAK32957.1|  499|Anopheles gambiae cytochrome P450 pr...    22   8.6  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +2

Query: 62  GATRAKVEIVL----PNERCLSYEVNRXIAVNNAGLYNGFXKVLIS 187
           G T+A V ++     PN+  + YE  R I++    +  G  K LI+
Sbjct: 73  GITKATVTLIFDNSNPNQCPIGYETCREISITRQIVVGGKNKYLIN 118


>DQ974172-1|ABJ52812.1|  409|Anopheles gambiae serpin 13 protein.
          Length = 409

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 137 AVNNAGLYNGFXKVLISDEEKRGAGRFY 220
           AV+  G  + F + L+SDE + G  RF+
Sbjct: 69  AVDQEG--SSFSRTLLSDESRGGLQRFF 94


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 92   ERFPLWHELLRLNRNYLPNGYLV 24
            ER+   H+L  LNR + P  Y +
Sbjct: 1543 ERWLRLHDLYCLNRPFFPERYTI 1565


>AY028783-1|AAK32957.1|  499|Anopheles gambiae cytochrome P450
           protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 13  KELRTKYPFGR*FRF 57
           +EL+ K+PFG  F+F
Sbjct: 59  RELKGKHPFGGIFQF 73


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 349,742
Number of Sequences: 2352
Number of extensions: 6253
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 28646721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)