Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20200
         (379 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB259784-1|BAF48662.1|  323|Caenorhabditis elegans ROG-1 protein.      28   1.9  
Z98866-25|CAL22710.1|  325|Caenorhabditis elegans Hypothetical p...    27   4.5  

>AB259784-1|BAF48662.1|  323|Caenorhabditis elegans ROG-1 protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 245 AYXXXVFDRRSGRLHVSLHPRSVLWXSRY 159
           +Y    FD RSGR++  + PRSV   S Y
Sbjct: 242 SYHRSSFDPRSGRINTPMRPRSVTDTSDY 270


>Z98866-25|CAL22710.1|  325|Caenorhabditis elegans Hypothetical
           protein Y49E10.28 protein.
          Length = 325

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = -3

Query: 128 D*LHKTDTFHL--AERFPLWH--ELLRLNRNYLPNGYLVRSSFRRI 3
           D LHKTD ++   A R  +     LL++  N  P+G LVR++FR I
Sbjct: 235 DELHKTDHWNRENASRSEICRLDALLKMAANSDPSGELVRTAFRSI 280


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,692,999
Number of Sequences: 27780
Number of extensions: 126691
Number of successful extensions: 233
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)