Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20200
         (379 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   2.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   8.4  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = -1

Query: 178 YFGEAVIEPGIVDGYXAINF-IR---QTPFIWQNDFHFGTS 68
           Y+GE +   G+VD      + +R   +TPF W N  + G S
Sbjct: 390 YYGEEI---GMVDNTTIYKYDVRDGCRTPFQWDNSINAGFS 427



 Score = 20.2 bits (40), Expect = 8.4
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -2

Query: 63  PVKSKLPSKWI 31
           P+K K P+ W+
Sbjct: 162 PIKDKYPNNWL 172


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 72  VPKWKSFCQMKGVCLMKL 125
           + K+K FC ++ V L +L
Sbjct: 197 IEKYKMFCNLENVKLKEL 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,614
Number of Sequences: 438
Number of extensions: 1755
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)