Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20200
         (379 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35753.1 68418.m04282 expressed protein                             29   0.78 
At1g19430.1 68414.m02421 dehydration-responsive protein-related ...    28   1.8  
At1g53645.1 68414.m06102 hydroxyproline-rich glycoprotein family...    27   3.1  
At1g24300.1 68414.m03066 GYF domain-containing protein contains ...    26   7.2  
At5g23575.1 68418.m02766 transmembrane protein, putative similar...    26   9.6  

>At5g35753.1 68418.m04282 expressed protein
          Length = 592

 Score = 29.5 bits (63), Expect = 0.78
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 192 KRNVEPAASTIKYXXXIRDTNSKSKSSXYEGQLEFQFKNKGQSKDL 329
           KRNV   +S   +   I  +N +SK++  + ++E  FK+ G+S  L
Sbjct: 232 KRNVGLGSSGNGFVENITKSNPESKATNLDAKMEHDFKHPGKSYGL 277


>At1g19430.1 68414.m02421 dehydration-responsive protein-related low
           similarity to early-responsive to dehydration stress
           ERD3 protein [Arabidopsis thaliana] GI:15320410;
           contains Pfam profile PF03141: Putative
           methyltransferase
          Length = 724

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
 Frame = -3

Query: 110 DTFHLAERFPLWHE-----LLRLNRNYLPNGYLVRSS 15
           DT H A     WH      LL +NR   PNGY + SS
Sbjct: 409 DTIHCAACGVHWHSHGGKLLLEMNRILRPNGYFILSS 445


>At1g53645.1 68414.m06102 hydroxyproline-rich glycoprotein family
           protein
          Length = 523

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 142 DGYXAINFIRQTPFIWQNDFHFGTS 68
           +G+   + ++QTPF+ Q+  HF +S
Sbjct: 13  NGFTIASLVKQTPFLTQSTSHFSSS 37


>At1g24300.1 68414.m03066 GYF domain-containing protein contains Pfam
            profile: PF02213 GYF domain
          Length = 1417

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = +2

Query: 11   GKNFELNIHLEGNFDLTGATRAKVEIVLPNERCLSYEVNRXIAVNNAGLYNGFXKVLISD 190
            G+   LNI  + + +L G  R K  +V+P+    S  + R  + +++  + G  +  ISD
Sbjct: 1260 GQQSSLNISDQYSDNLVGEDRRKDRLVVPSHGQNSVLLKRPPSSHSSSSHEGLIE-RISD 1318

Query: 191  EEKRGAGRFYDQI 229
               R A   Y  I
Sbjct: 1319 TASRTAASSYSGI 1331


>At5g23575.1 68418.m02766 transmembrane protein, putative similar
          to cleft lip and palate transmembrane protein 1 [Homo
          sapiens] GI:4039014; contains Pfam profile PF05602:
          Cleft lip and palate transmembrane protein 1 (CLPTM1)
          Length = 593

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 99 FGRTISTLARVAPVKSKLPSKWIFSSKFFPP 7
          FG TIS + R+A         W F+SKFF P
Sbjct: 28 FGSTISGIVRIAVF-------WYFASKFFSP 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,302,560
Number of Sequences: 28952
Number of extensions: 120688
Number of successful extensions: 244
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)