Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20197
         (471 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   1.9  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   4.3  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   4.3  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    21   7.6  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   7.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.6  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 137 GRDHDRVHEDRRGLYLH 87
           G+D   VH  RRGL LH
Sbjct: 14  GQDKHMVHWFRRGLRLH 30


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 391 NNGHIGFGCEVQQGK 435
           NN   GF C+  QGK
Sbjct: 225 NNYQEGFSCQYYQGK 239


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 391 NNGHIGFGCEVQQGK 435
           NN   GF C+  QGK
Sbjct: 245 NNYQEGFSCQYYQGK 259


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 326 LYRNKHVPDSAHVSRHL 376
           L + K  PD A + RHL
Sbjct: 51  LEKGKCTPDGAELKRHL 67


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 223 VDFSFANKTAEFGDRN 176
           VDF F N +A F D N
Sbjct: 82  VDFLFDNFSAAFQDHN 97


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 223 VDFSFANKTAEFGDRN 176
           VDF F N +A F D N
Sbjct: 315 VDFLFDNFSAAFQDHN 330


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 223 VDFSFANKTAEFGDRN 176
           VDF F N +A F D N
Sbjct: 315 VDFLFDNFSAAFQDHN 330


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,568
Number of Sequences: 336
Number of extensions: 1720
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10931752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)