Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20197
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    92   4e-20
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   0.83 
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    27   1.1  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    27   1.9  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    25   5.8  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   7.7  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 91.9 bits (218), Expect = 4e-20
 Identities = 42/67 (62%), Positives = 53/67 (79%)
 Frame = +1

Query: 214 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 393
           K +   E  L    IKE++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 394 NGHIGFG 414
           +GH+G G
Sbjct: 107 DGHVGLG 113



 Score = 62.5 bits (145), Expect = 3e-11
 Identities = 39/105 (37%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
 Frame = +2

Query: 155 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSKNSRSLISSSARP*MMRF*RSCLYR 334
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SL  K  +  I     P +       +  
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQ--IVDYFLPRLNDEVMKVVPV 85

Query: 335 NKHVPDSAHVS-RHLLPLATTTXILVLGVKCSKESXPAIRGAIIL 466
            K          +  + +  +   + LG+KC+KE   AIRGAII+
Sbjct: 86  QKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIM 130


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 152 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 27
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 193 RPSCSRRKNRQTREHLLVFFTIKEFEIIDFFLGPSLNDE 309
           R    +++NR+T +  LV  T+      +FF  P L+D+
Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 328 VQKQTRAGQRTRFKAFVAIGDNNGHIGFGCEVQQGKXPCHSRRY 459
           V  QTR G+         +G+ NG  GFG    +GK   +S  Y
Sbjct: 235 VVNQTRKGKIASMYVLTVVGNRNGVAGFG----EGKAESYSLAY 274


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 263 NSRSLISSSARP*MMRF*RSCLYRNKHVPDSAHVSRH 373
           +SR+ I S+     +++  S   R KH+P+   ++RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 309 LIIQGRAEEEINDLEFFDCKENK*MLSSL 223
           LI++    EEI+D +F D   N  +++SL
Sbjct: 856 LILKSLGVEEISDFDFMDRPPNDTLMASL 884


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,716,866
Number of Sequences: 5004
Number of extensions: 30805
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)