Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20197
         (471 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0386 + 33555682-33556344,33557138-33557299                       82   2e-16
07_01_0756 + 5819367-5820038,5820847-5821005                           78   4e-15
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216...    36   0.016
06_01_0156 + 1171717-1174140                                           27   5.8  
05_01_0539 + 4653028-4653158,4654329-4654973,4655323-4655448,465...    27   5.8  
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384...    27   7.6  

>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 36/53 (67%), Positives = 44/53 (83%)
 Frame = +1

Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGFG 414
           +KE +I++  + P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+G G
Sbjct: 72  VKEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLG 123



 Score = 63.7 bits (148), Expect = 7e-11
 Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
 Frame = +2

Query: 155 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSKNSR--SLISSSARP*MMRF*RSCL 328
           ++++++WVPVTKLGRLV+EG+  K+E IYL SL  K  +    +    +  +M+   + +
Sbjct: 38  RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLVPGLKDEVMKI--TPV 95

Query: 329 YRNKHVPDSAHVSRHLLPLATTTXILVLGVKCSKESXPAIRGAIILA 469
            +             ++ +      + LGVKC+KE   AIRGAIILA
Sbjct: 96  QKQTRAGQRTRFKAFVV-VGDNNGHVGLGVKCAKEVATAIRGAIILA 141


>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score = 77.8 bits (183), Expect = 4e-15
 Identities = 37/67 (55%), Positives = 47/67 (70%)
 Frame = +1

Query: 214 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 393
           K  +  E  L    +KE +I++  + P L DEV+KI PVQKQTRAGQRTRFKAFV +GD 
Sbjct: 61  KIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDG 119

Query: 394 NGHIGFG 414
           +GH+G G
Sbjct: 120 DGHVGLG 126



 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
 Frame = +2

Query: 155 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSKNSRSL--ISSSARP*MMRF*RSCL 328
           ++++++WVPVTKLGRLV+E KI K+E IYL SL  K  + +  +    +  +M+   + +
Sbjct: 41  RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLVPGLKDEVMKI--TPV 98

Query: 329 YRNKHVPDSAHVSRHLLPLATTTXILVLGVKCSKESXPAIRGAIILA 469
            +             ++ +      + LGVKC+KE   AIRGAIILA
Sbjct: 99  QKQTRAGQRTRFKAFVV-VGDGDGHVGLGVKCAKEVATAIRGAIILA 144


>03_04_0238 -
           19219040-19219218,19220296-19220350,19221606-19221690,
           19222068-19222798
          Length = 349

 Score = 35.9 bits (79), Expect = 0.016
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +1

Query: 301 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGFG 414
           ++ V+++  V K  + G++  F+A V +GD  GH+G G
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVG 208


>06_01_0156 + 1171717-1174140
          Length = 807

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -2

Query: 329 TGMIFR-TSSFRDGPRKKSMISNSLIV 252
           TGMI+  TSS+ D   + SM+S SLIV
Sbjct: 20  TGMIWNLTSSYTDKSNEASMVSASLIV 46


>05_01_0539 +
           4653028-4653158,4654329-4654973,4655323-4655448,
           4655537-4655813,4655916-4656143
          Length = 468

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +1

Query: 310 VLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGFGCEVQQGKXPCHSRR 456
           ++ + PV+ +TR+ +   F       +N GH     ++     P  SRR
Sbjct: 61  LMAVPPVESETRSEETDNFPLLADHMENTGHHAHAVDIPWDSSPSTSRR 109


>03_01_0510 +
           3841630-3844089,3844235-3844358,3844641-3844786,
           3844861-3844958,3845313-3845502
          Length = 1005

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 140 HGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPPLLNDGL 9
           +GR H     D RG+ L+ +++  R +  V++ E   P L  GL
Sbjct: 48  YGRIHFPGDTDVRGMDLNGIVKFGRHSVEVYKDEASKPPLGQGL 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,792,508
Number of Sequences: 37544
Number of extensions: 219474
Number of successful extensions: 689
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)