Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20197
(471 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 107 3e-24
SB_20635| Best HMM Match : rve (HMM E-Value=0.91) 32 0.21
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.21
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.21
SB_52533| Best HMM Match : rve (HMM E-Value=2) 32 0.21
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7) 32 0.21
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33) 32 0.21
SB_53761| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 28 4.5
SB_45835| Best HMM Match : TLD (HMM E-Value=0.4) 28 4.5
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 107 bits (258), Expect = 3e-24
Identities = 51/65 (78%), Positives = 57/65 (87%), Gaps = 1/65 (1%)
Frame = +1
Query: 223 QTREHLLVF-FTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 399
+T EH+ +F IKEFEIIDFFLG +L DEVLKIMPVQKQTRAGQRTRFKAFVAIGD+NG
Sbjct: 24 KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83
Query: 400 HIGFG 414
H+G G
Sbjct: 84 HVGLG 88
Score = 58.4 bits (135), Expect = 3e-09
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Frame = +2
Query: 173 WVPVTKLGRLVREGKIDKLESIYLFSLQSKNSRSL---ISSSARP*MMRF*RSCLYRNKH 343
WVPVTKLGRLV++ KI LE IYLFSL K + + ++ + +++ + +
Sbjct: 8 WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKI--MPVQKQTR 65
Query: 344 VPDSAHVSRHLLPLATTTXILVLGVKCSKESXPAIRGAIILA 469
+ + + + + LGVKCSKE AIRGAIILA
Sbjct: 66 AGQRTRF-KAFVAIGDSNGHVGLGVKCSKEVATAIRGAIILA 106
>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
Length = 748
Score = 32.3 bits (70), Expect = 0.21
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 301 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGFGC 417
N +LK++ + Q +A + F+ FVA + H G GC
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTGC 193
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 32.3 bits (70), Expect = 0.21
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 301 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGFGC 417
N +LK++ + Q +A + F+ FVA + H G GC
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTGC 849
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 32.3 bits (70), Expect = 0.21
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 301 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGFGC 417
N +LK++ + Q +A + F+ FVA + H G GC
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTGC 2046
>SB_52533| Best HMM Match : rve (HMM E-Value=2)
Length = 212
Score = 32.3 bits (70), Expect = 0.21
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 301 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGFGC 417
N +LK++ + Q +A + F+ FVA + H G GC
Sbjct: 95 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTGC 133
>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
Length = 212
Score = 32.3 bits (70), Expect = 0.21
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 301 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGFGC 417
N +LK++ + Q +A + F+ FVA + H G GC
Sbjct: 9 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTGC 47
>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
Length = 735
Score = 32.3 bits (70), Expect = 0.21
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 301 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGFGC 417
N +LK++ + Q +A + F+ FVA + H G GC
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTGC 570
>SB_53761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 307 EVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGFGCEVQQ 429
E +I + K++ AG + R +A + G + FGCE+Q+
Sbjct: 296 EFSEIWNIIKESLAGAKERLRASILEQYVKGFVAFGCEIQK 336
>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 1130
Score = 27.9 bits (59), Expect = 4.5
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 351 TAHTFQGICCHWRQQRXYW 407
TA + ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504
>SB_45835| Best HMM Match : TLD (HMM E-Value=0.4)
Length = 174
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 168 KSGFLSPNSAVLFAKEKSTNSRAFTCFLYNQ 260
KSG L ++F E +S+AF C LYN+
Sbjct: 56 KSGRLGGMPNIVFNSEYQWSSKAFLCTLYNK 86
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,622,666
Number of Sequences: 59808
Number of extensions: 251031
Number of successful extensions: 701
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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