Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20197
         (471 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml prot...   107   6e-24
U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal prot...   107   6e-24
U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal prot...   107   6e-24
AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p pro...   107   6e-24
AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA...   107   6e-24
BT029103-1|ABJ17036.1|  823|Drosophila melanogaster IP14290p pro...    31   1.0  
AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA...    31   1.0  
BT003459-1|AAO39462.1|  925|Drosophila melanogaster RH30917p pro...    29   4.2  
AE014298-780|AAF46066.2|  725|Drosophila melanogaster CG33080-PB...    29   4.2  
AE014298-779|AAF46068.2|  925|Drosophila melanogaster CG33080-PA...    29   4.2  

>X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml protein
           S2 protein.
          Length = 267

 Score =  107 bits (258), Expect = 6e-24
 Identities = 53/67 (79%), Positives = 54/67 (80%)
 Frame = +1

Query: 214 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 393
           K +   E  L    IKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 394 NGHIGFG 414
           NGHIG G
Sbjct: 117 NGHIGLG 123



 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 48/108 (44%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
 Frame = +2

Query: 155 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSKNSRSL---ISSSARP*MMRF*RSC 325
           KED KEWVPVTKLGRLVREGKI  LE IYL+SL  K    +   + SS +  +++     
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKI--MP 94

Query: 326 LYRNKHVPDSAHVSRHLLPLATTTXILVLGVKCSKESXPAIRGAIILA 469
           + +           +  + +      + LGVKCSKE   AIRGAIILA
Sbjct: 95  VQKQTRAGQRTRF-KAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 141


>U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  107 bits (258), Expect = 6e-24
 Identities = 53/67 (79%), Positives = 54/67 (80%)
 Frame = +1

Query: 214 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 393
           K +   E  L    IKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 394 NGHIGFG 414
           NGHIG G
Sbjct: 117 NGHIGLG 123



 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 48/108 (44%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
 Frame = +2

Query: 155 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSKNSRSL---ISSSARP*MMRF*RSC 325
           KED KEWVPVTKLGRLVREGKI  LE IYL+SL  K    +   + SS +  +++     
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKI--MP 94

Query: 326 LYRNKHVPDSAHVSRHLLPLATTTXILVLGVKCSKESXPAIRGAIILA 469
           + +           +  + +      + LGVKCSKE   AIRGAIILA
Sbjct: 95  VQKQTRAGQRTRF-KAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 141


>U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  107 bits (258), Expect = 6e-24
 Identities = 53/67 (79%), Positives = 54/67 (80%)
 Frame = +1

Query: 214 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 393
           K +   E  L    IKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 394 NGHIGFG 414
           NGHIG G
Sbjct: 117 NGHIGLG 123



 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 48/108 (44%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
 Frame = +2

Query: 155 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSKNSRSL---ISSSARP*MMRF*RSC 325
           KED KEWVPVTKLGRLVREGKI  LE IYL+SL  K    +   + SS +  +++     
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKI--MP 94

Query: 326 LYRNKHVPDSAHVSRHLLPLATTTXILVLGVKCSKESXPAIRGAIILA 469
           + +           +  + +      + LGVKCSKE   AIRGAIILA
Sbjct: 95  VQKQTRAGQRTRF-KAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 141


>AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p
           protein.
          Length = 267

 Score =  107 bits (258), Expect = 6e-24
 Identities = 53/67 (79%), Positives = 54/67 (80%)
 Frame = +1

Query: 214 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 393
           K +   E  L    IKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 394 NGHIGFG 414
           NGHIG G
Sbjct: 117 NGHIGLG 123



 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 48/108 (44%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
 Frame = +2

Query: 155 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSKNSRSL---ISSSARP*MMRF*RSC 325
           KED KEWVPVTKLGRLVREGKI  LE IYL+SL  K    +   + SS +  +++     
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKI--MP 94

Query: 326 LYRNKHVPDSAHVSRHLLPLATTTXILVLGVKCSKESXPAIRGAIILA 469
           + +           +  + +      + LGVKCSKE   AIRGAIILA
Sbjct: 95  VQKQTRAGQRTRF-KAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 141


>AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA
           protein.
          Length = 267

 Score =  107 bits (258), Expect = 6e-24
 Identities = 53/67 (79%), Positives = 54/67 (80%)
 Frame = +1

Query: 214 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 393
           K +   E  L    IKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 394 NGHIGFG 414
           NGHIG G
Sbjct: 117 NGHIGLG 123



 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 48/108 (44%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
 Frame = +2

Query: 155 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSKNSRSL---ISSSARP*MMRF*RSC 325
           KED KEWVPVTKLGRLVREGKI  LE IYL+SL  K    +   + SS +  +++     
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKI--MP 94

Query: 326 LYRNKHVPDSAHVSRHLLPLATTTXILVLGVKCSKESXPAIRGAIILA 469
           + +           +  + +      + LGVKCSKE   AIRGAIILA
Sbjct: 95  VQKQTRAGQRTRF-KAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 141


>BT029103-1|ABJ17036.1|  823|Drosophila melanogaster IP14290p
           protein.
          Length = 823

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 161 LPCRAHDHGRDHDRVHEDRRGLYLHRVIRIRREN-RHVHRLEQRPPLLN 18
           L C  H    D  R+H  ++GL +  V+ + REN   VH + ++  LLN
Sbjct: 359 LDCTLHIEDVDQVRLHGYQQGLIVRDVLYVNRENINFVHEVYRQAFLLN 407


>AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA
           protein.
          Length = 1958

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 161 LPCRAHDHGRDHDRVHEDRRGLYLHRVIRIRREN-RHVHRLEQRPPLLN 18
           L C  H    D  R+H  ++GL +  V+ + REN   VH + ++  LLN
Sbjct: 325 LDCTLHIEDVDQVRLHGYQQGLIVRDVLYVNRENINFVHEVYRQAFLLN 373


>BT003459-1|AAO39462.1|  925|Drosophila melanogaster RH30917p
           protein.
          Length = 925

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 187 QTRPSCSRRKNRQTREHLLVFFTIKEFEIIDFFLG 291
           Q  P   R+K R+T+++ +  F I  F II F +G
Sbjct: 233 QAFPQLIRKKKRETKDYKIKIFVIIMFFIIIFLIG 267


>AE014298-780|AAF46066.2|  725|Drosophila melanogaster CG33080-PB,
           isoform B protein.
          Length = 725

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 187 QTRPSCSRRKNRQTREHLLVFFTIKEFEIIDFFLG 291
           Q  P   R+K R+T+++ +  F I  F II F +G
Sbjct: 33  QAFPQLIRKKKRETKDYKIKIFVIIMFFIIIFLIG 67


>AE014298-779|AAF46068.2|  925|Drosophila melanogaster CG33080-PA,
           isoform A protein.
          Length = 925

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 187 QTRPSCSRRKNRQTREHLLVFFTIKEFEIIDFFLG 291
           Q  P   R+K R+T+++ +  F I  F II F +G
Sbjct: 233 QAFPQLIRKKKRETKDYKIKIFVIIMFFIIIFLIG 267


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,416,999
Number of Sequences: 53049
Number of extensions: 372861
Number of successful extensions: 2302
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1805
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1601407269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)