Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20197
         (471 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...    81   4e-16
Z81094-6|CAB03154.1|  666|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    27   6.8  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score = 81.0 bits (191), Expect = 4e-16
 Identities = 41/53 (77%), Positives = 44/53 (83%)
 Frame = +1

Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGFG 414
           IKEFEIID  L  +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+G G
Sbjct: 85  IKEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLG 136



 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
 Frame = +2

Query: 158 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSKNSRSL--ISSSARP*MMRF*RSCLY 331
           E + EW PVTKLGRLV+E KI  LE IYL SL  K    +  + S+ +  +++   S + 
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDALCSNLKDEVLKI--SPVQ 109

Query: 332 RNKHVPDSAHVSRHLLPLATTTXILVLGVKCSKESXPAIRGAIILA 469
           +           +  + +      + LGVKCSKE   AIRGAI+ A
Sbjct: 110 KQTTAGQRTRF-KAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAA 154


>Z81094-6|CAB03154.1|  666|Caenorhabditis elegans Hypothetical
           protein F58G11.3a protein.
          Length = 666

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 419 SHPKPIXPLLSPMATNALKRVRCPARVCFC 330
           S PKP   LL PM+  A  ++R  +RV  C
Sbjct: 615 SPPKPFTVLLPPMSKGAGVKIRPRSRVVLC 644


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 378 NKCLETCALSGTCLFLYR-HDL*NLIIQGR 292
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 378 NKCLETCALSGTCLFLYR-HDL*NLIIQGR 292
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,822,815
Number of Sequences: 27780
Number of extensions: 185546
Number of successful extensions: 562
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)