Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20197
(471 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 95 2e-20
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 95 2e-20
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 93 7e-20
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 93 7e-20
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 93 7e-20
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 93 7e-20
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 39 0.002
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 31 0.39
At3g22690.1 68416.m02863 pentatricopeptide (PPR) repeat-containi... 30 0.91
At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (AT... 28 3.7
At2g37930.1 68415.m04656 expressed protein 28 3.7
At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 27 4.8
At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to ... 27 6.4
At5g47430.1 68418.m05844 expressed protein 27 8.5
At5g38386.1 68418.m04638 F-box family protein contains F-box dom... 27 8.5
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 27 8.5
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 27 8.5
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 27 8.5
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 95.1 bits (226), Expect = 2e-20
Identities = 39/53 (73%), Positives = 48/53 (90%)
Frame = +1
Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGFG 414
+KE++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+G G
Sbjct: 73 VKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLG 125
Score = 68.5 bits (160), Expect = 2e-12
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSKNSR---SLISSSARP*MMRF*RSCLY 331
++++WVPVTKLGRLV+EGKI K+E IYL SL K + L+ S + +M+ +
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKI--MPVQ 98
Query: 332 RNKHVPDSAHVSRHLLPLATTTXILVLGVKCSKESXPAIRGAIILA 469
+ ++ + + + LGVKCSKE AIRGAIILA
Sbjct: 99 KQTRAGQRTRFKAFIV-VGDSNGHVGLGVKCSKEVATAIRGAIILA 143
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 95.1 bits (226), Expect = 2e-20
Identities = 41/65 (63%), Positives = 51/65 (78%)
Frame = +1
Query: 220 RQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 399
+Q + L +KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NG
Sbjct: 70 KQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 129
Query: 400 HIGFG 414
H+G G
Sbjct: 130 HVGLG 134
Score = 58.8 bits (136), Expect = 2e-09
Identities = 40/104 (38%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSKNSRSLISSSARP*MMRF*RSCLYRNK 340
++++WVPVTKLGRLV G I ++E IYL SL K + +I P + + K
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQ-IIDMLIGPTLKDEVMKIMPVQK 108
Query: 341 HVPDSAHVS-RHLLPLATTTXILVLGVKCSKESXPAIRGAIILA 469
+ + + + LGVKCSKE AIRGAIILA
Sbjct: 109 QTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILA 152
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 93.5 bits (222), Expect = 7e-20
Identities = 39/53 (73%), Positives = 47/53 (88%)
Frame = +1
Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGFG 414
+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+G G
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 133
Score = 62.1 bits (144), Expect = 2e-10
Identities = 42/104 (40%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSKNSRSLISSSARP*MMRF*RSCLYRNK 340
++ +WVPVTKLGRLV + KI KLE IYL SL K + +I P + + K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQ-IIDHLVGPTLKDEVMKIMPVQK 107
Query: 341 HVPDSAHVS-RHLLPLATTTXILVLGVKCSKESXPAIRGAIILA 469
+ + + + LGVKCSKE AIRGAIILA
Sbjct: 108 QTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILA 151
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 93.5 bits (222), Expect = 7e-20
Identities = 39/53 (73%), Positives = 47/53 (88%)
Frame = +1
Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGFG 414
+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+G G
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 133
Score = 62.1 bits (144), Expect = 2e-10
Identities = 42/104 (40%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSKNSRSLISSSARP*MMRF*RSCLYRNK 340
++ +WVPVTKLGRLV + KI KLE IYL SL K + +I P + + K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQ-IIDHLVGPTLKDEVMKIMPVQK 107
Query: 341 HVPDSAHVS-RHLLPLATTTXILVLGVKCSKESXPAIRGAIILA 469
+ + + + LGVKCSKE AIRGAIILA
Sbjct: 108 QTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILA 151
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 93.5 bits (222), Expect = 7e-20
Identities = 39/53 (73%), Positives = 47/53 (88%)
Frame = +1
Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGFG 414
+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+G G
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 133
Score = 62.1 bits (144), Expect = 2e-10
Identities = 42/104 (40%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSKNSRSLISSSARP*MMRF*RSCLYRNK 340
++ +WVPVTKLGRLV + KI KLE IYL SL K + +I P + + K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQ-IIDHLVGPTLKDEVMKIMPVQK 107
Query: 341 HVPDSAHVS-RHLLPLATTTXILVLGVKCSKESXPAIRGAIILA 469
+ + + + LGVKCSKE AIRGAIILA
Sbjct: 108 QTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILA 151
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 93.5 bits (222), Expect = 7e-20
Identities = 39/53 (73%), Positives = 47/53 (88%)
Frame = +1
Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGFG 414
+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+G G
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 133
Score = 62.1 bits (144), Expect = 2e-10
Identities = 42/104 (40%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSKNSRSLISSSARP*MMRF*RSCLYRNK 340
++ +WVPVTKLGRLV + KI KLE IYL SL K + +I P + + K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQ-IIDHLVGPTLKDEVMKIMPVQK 107
Query: 341 HVPDSAHVS-RHLLPLATTTXILVLGVKCSKESXPAIRGAIILA 469
+ + + + LGVKCSKE AIRGAIILA
Sbjct: 108 QTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILA 151
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 38.7 bits (86), Expect = 0.002
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +1
Query: 304 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGFGC 417
+ V+++ V K + G++ +F+A V +GD G++G GC
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGC 186
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 31.1 bits (67), Expect = 0.39
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 350 PARVCFCTGMIFRTSSFRDGPRKKSMISNSLIVKKTSK 237
P R FC+G+ +S + PR+KS +S+ L KK K
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKLRFKKIEK 80
>At3g22690.1 68416.m02863 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 978
Score = 29.9 bits (64), Expect = 0.91
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 180 LSPNSAVLFAKEKSTNSRAF-TCFLYNQRIRDH 275
L ++ FAKE NS ++ TCF+YN IR +
Sbjct: 77 LGTRESLSFAKEVFENSESYGTCFMYNSLIRGY 109
>At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (ATHIM)
identical to SP|P34881 DNA (cytosine-5)-methyltransferase
AthI (EC 2.1.1.37) {Arabidopsis thaliana}
Length = 1534
Score = 27.9 bits (59), Expect = 3.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 455 RLEWQGXFPCCTSHPKPI 402
RL+WQG FP + P+P+
Sbjct: 1444 RLDWQGNFPTSVTDPQPM 1461
>At2g37930.1 68415.m04656 expressed protein
Length = 467
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 190 TRPSCSRRKNRQTREHLLVFFTI-KEFEIIDFFLGPSLNDEVLKIM 324
TRP +K +R H L+ FT+ K + F +G + N+ + M
Sbjct: 196 TRPPTKEKKQSSSRVHALLQFTLRKGINLFQFVVGDNSNNVLAATM 241
>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
Pisum sativum, EMBL:AF004843
Length = 411
Score = 27.5 bits (58), Expect = 4.8
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 3 LSEPIVQQWRTLLQP 47
+S PI +QWRTL++P
Sbjct: 150 VSNPITKQWRTLIEP 164
>At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to
embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
supporting cDNA gi|14276049|dbj|AB053171.1|
Length = 626
Score = 27.1 bits (57), Expect = 6.4
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 331 QKQTRAGQRTRFKAFVAIGDNNGHIGFGCEVQQGKXPCHSRR 456
++QT R R K+ V H+G GCEV HS R
Sbjct: 384 KQQTFFFSRRRQKSQVRSSRQGPHLGLGCEVLDKTDDAHSVR 425
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 26.6 bits (56), Expect = 8.5
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -2
Query: 143 DHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 27
+H R DR EDR + H R H HR PP
Sbjct: 718 EHDRTRDRRDEDRSRDHRHHRGETERSQHH-HRKRSEPP 755
>At5g38386.1 68418.m04638 F-box family protein contains F-box domain
Pfam:PF00646
Length = 403
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -2
Query: 299 RDGPRKKSMISNSLIVKKTSKCSRVCRFFLREQDGR 192
R+ P ++++ +L+ T KC C RE+ GR
Sbjct: 288 RNCPHLETLVLEALLHHVTDKCGDACACVSREEKGR 323
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 26.6 bits (56), Expect = 8.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 134 RDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 27
RDHDR +DR G R R R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 26.6 bits (56), Expect = 8.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 134 RDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 27
RDHDR +DR G R R R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 26.6 bits (56), Expect = 8.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 134 RDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 27
RDHDR +DR G R R R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,259,417
Number of Sequences: 28952
Number of extensions: 171858
Number of successful extensions: 487
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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