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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20195
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   1.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.7  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 138 IREFNTHINISLFIKYIYFLRGYGVS 215
           +REFN + N+  F+ + Y LR   VS
Sbjct: 40  VREFNVYWNVPTFMCHKYGLRFEEVS 65


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 58  INPRSAGRMWYG 23
           + PRS GR W G
Sbjct: 911 VTPRSPGRAWPG 922


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 202 DTEFQVNRMHG 234
           +T FQVN+ HG
Sbjct: 688 NTHFQVNQSHG 698


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,141
Number of Sequences: 438
Number of extensions: 2421
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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