Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20194
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078...    29   2.8  
04_01_0613 - 8042568-8042686,8043107-8043206,8043550-8043594,804...    29   2.8  
02_05_1234 - 35127322-35128378,35128423-35128467,35130016-351302...    28   6.5  
02_02_0468 + 10633992-10634064,10635998-10636130,10636244-106363...    28   6.5  

>06_02_0187 +
           12805788-12807007,12807059-12807186,12807811-12807859,
           12808508-12808853
          Length = 580

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = -2

Query: 242 LSMIRLLTTFWMMEPLPWL-----SYSKL*RTALS*SPVRMLLYSFSSRSWLEVSADSST 78
           L+++ L+   W + P   L     + S      L  SP   +  SF S +    S D++T
Sbjct: 36  LALLTLIMALWQLHPYQPLVLLPAALSSSPCPLLPRSPTSGIAVSFLSTAAATNSTDTAT 95

Query: 77  TPALAASMHIANTTR 33
            P   A+  +A TTR
Sbjct: 96  VPTTTAAARVAATTR 110


>04_01_0613 -
           8042568-8042686,8043107-8043206,8043550-8043594,
           8043691-8043770,8045082-8046322,8047077-8047507
          Length = 671

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/93 (23%), Positives = 40/93 (43%)
 Frame = +1

Query: 31  LLVVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSII 210
           +LV   +     S  ++ + A  ++ ++ EKLYN +   +   +      Y   GK  I 
Sbjct: 196 MLVSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIA 255

Query: 211 QNVVNNLIIDKRRNTWSTATSCGSATDRKLLES 309
            ++ N +   K   +WS A   G A   K +E+
Sbjct: 256 HSIFNGMPA-KDVVSWS-AMIAGYAESSKPMEA 286


>02_05_1234 -
           35127322-35128378,35128423-35128467,35130016-35130275,
           35130610-35131365,35132115-35132122,35133559-35134327
          Length = 964

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -2

Query: 509 EYNSVVLPQGNELPTDEFSMLVYTIAVGNSLIRGIGCGTELQSEVVVSVN 360
           E N  ++P+G     D +++    I  GN+++R IG  T L    V  +N
Sbjct: 686 EENGTMVPKGIRNLKDLYTLRDVNIGRGNAILRDIGMLTGLHKLGVAGIN 735


>02_02_0468 +
           10633992-10634064,10635998-10636130,10636244-10636315,
           10637028-10637171,10637271-10637342,10637451-10637516,
           10637603-10637673,10637796-10637936,10638347-10638688,
           10638989-10639383,10639481-10639795
          Length = 607

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +1

Query: 121 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRNTWSTATSCGSATDRKL 300
           K+Y  +L      AV++  +YES G  +     V  + +   RN       C + T+R L
Sbjct: 297 KVYKGVLPDGTKIAVKRLTDYESPGGEAAFLREVELISVAVHRNLLKLIGFCTTQTERLL 356

Query: 301 L 303
           +
Sbjct: 357 V 357


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,988,870
Number of Sequences: 37544
Number of extensions: 333143
Number of successful extensions: 1085
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)