Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20194
         (594 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)                     29   3.7  
SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23)                 28   4.9  
SB_20858| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)                   28   6.5  
SB_23517| Best HMM Match : WD40 (HMM E-Value=0)                        27   8.6  

>SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)
          Length = 672

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/76 (22%), Positives = 31/76 (40%)
 Frame = -1

Query: 258 PCVPSLVNDQVVNYILDDGXXXXXLIFQALTDSTVVVAGEDAVVQFLLEVLVRSVRG*FN 79
           PC   L+N + +N  L DG     L F    +    ++G+  V+ +      R       
Sbjct: 446 PCAAGLLNRKHLNIWLSDGNTLGKLHFDPFENFLCQISGKKQVILYEPHDNTRLYEAHIQ 505

Query: 78  DARAGGEHAHRKYNEK 31
           ++     HAH+++  K
Sbjct: 506 ESMLEYNHAHKEFRRK 521


>SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23)
          Length = 936

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -3

Query: 589 QNGSRLLQLQVVVLIFKYWLYLVLWILSTTLLFSHKVMNFQLTSSVCLSTPSP 431
           Q G +LL + V +     W YL+ W +  ++ F+   ++F L+S V     SP
Sbjct: 839 QLGVQLLGVVVTIAWSAVWTYLLSWFIHISVGFN---LSFSLSSGVTKKAHSP 888


>SB_20858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 320 KL*THHGRKLCQDHLQKLQPRSEAR 394
           +L  HHGR+L +DHL    PR   R
Sbjct: 199 RLLKHHGRELIKDHLDLPLPRQPKR 223


>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
          Length = 1514

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 59   SPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKAR 199
            +PP+R S    R+     SR    T S+P T +  S RA + R KA+
Sbjct: 1359 APPSRTSTPRSRSTPRSRSRSRTRTPSTPFTPSTTSSRA-SSRGKAK 1404


>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 860

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
 Frame = +2

Query: 110 TSRRNCTTASSPATTTVLS------VRAWNMRAKARAP 205
           TSR NC   + P +T ++S      +R W+ R++++ P
Sbjct: 655 TSRVNCVKFNQPDSTVIISGSYDSTIRCWDCRSRSQEP 692


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,303,602
Number of Sequences: 59808
Number of extensions: 380309
Number of successful extensions: 1076
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)