Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20194
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    26   0.32 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.1  

>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
 Frame = +1

Query: 40  VFAMCMLAASAGVVELSADTSNQDLEEKLYNS----ILTGDYDSAVRQSLEYESQGKGSI 207
           +FA CM   ++  +++  D     + + L  S    I++ D+D +     EY +  +   
Sbjct: 37  LFARCMGGINSRNMDIEHDPGLAAVLQYLIRSGQLNIISSDHDDSDE---EYAANSQPPR 93

Query: 208 IQNVVNNLIIDKRRNTWSTATSCG--SATDRKLLESTS 315
           I +V N   +DK   + +T  +CG     D++ L  TS
Sbjct: 94  ITSVPNTSRLDKSEISLATKQACGFIDNIDKRNLSVTS 131


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 92  ADSSTTPALAASMHIANTTRSFILLGAFQI 3
           A+   +  +A  +HI+N T SF L G F++
Sbjct: 396 ANKMESSGMAGRVHISNATLSF-LNGEFEV 424


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 577 RLLQLQVVVLIFKYWLYLVLWIL 509
           +L + QV++ I   W Y + W L
Sbjct: 156 KLSRGQVILFIVLIWTYTIPWAL 178


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 435  DGVDKHTELVSWK 473
            D +D+HT  V+WK
Sbjct: 986  DDLDQHTLKVTWK 998


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,474
Number of Sequences: 438
Number of extensions: 3830
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)