Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20193
(562 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 29 0.62
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 1.4
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.4
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 27 2.5
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 26 4.4
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 25 7.6
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 25 7.6
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 7.6
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 7.6
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 25 7.6
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 28.7 bits (61), Expect = 0.62
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3
Query: 350 VHKLNRVFGEDKSELNWETIPDDVL 276
+H + EDKS+L +ETIPD VL
Sbjct: 9 IHPVRHSKYEDKSKLPFETIPDPVL 33
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 106 QLYNSVVVADYDSAVEKSKHLYEEKKS 186
QL N DY+ E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 1.4
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 265 SRAPRTSSGIVSQLSSDLSSP-KTRLSLCTSATVS 366
S P T S + S LSS SSP T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 295 VSQLSSDLSSPKTRLSLCTSATV 363
VS L +DL + KT+LS SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 25.8 bits (54), Expect = 4.4
Identities = 24/97 (24%), Positives = 41/97 (42%)
Frame = +1
Query: 73 DSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYA 252
DS + +E + V + D A+E EE+K +T VV+ +I N + Y
Sbjct: 1051 DSCTAYGVWDESWAQKISVVNGDLALENWG--IEERKWNKLTEVVDYVIHNGALVHWVYP 1108
Query: 253 YNFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATV 363
Y+ R P I + L K+ + +++TV
Sbjct: 1109 YS-KLRGPNVMGTITALKLCSLGKGKSLSFVSSTSTV 1144
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.0 bits (52), Expect = 7.6
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 172 EEKKSEVITNVVNKLIRNNKMNCMEYAYNFGSRAPRTSSGIVSQLSSD--LSSPKTRLSL 345
E ++ VI + + L+++ MNC +YA ++ R + I+S +S + S+ + R
Sbjct: 1111 EMERDAVIGHGTSFLMQDRLMNCSDYAQSWVCRDCGSIISIMSTISMNGVGSASEVRCRS 1170
Query: 346 CTSATVSL 369
C + L
Sbjct: 1171 CAKPALGL 1178
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 25.0 bits (52), Expect = 7.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -3
Query: 488 DLVVLPQSD*LPADSRACLVLAVAVGRSAIVALNIIAQRQSETVA 354
DLV+L D +PAD R + + S + N ++ SE ++
Sbjct: 140 DLVILQIGDRVPADLRIVEATELEIDESNLTGENSPRKKSSEAIS 184
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.0 bits (52), Expect = 7.6
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 365 ETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKL 255
E V +H L+ F ED+ E E I DV A++PKL
Sbjct: 2004 ELVTTLHSLDVFFAEDRDE---ELIQPDV--AVDPKL 2035
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 222 KQQDELHGVRLQLWLQGSKDIVRDCFPVEFRLIFAENA 335
+++D+L V L +L+ + DCF + +++ ENA
Sbjct: 926 REEDQLSRVTLLEYLKQLHPVEWDCFVKDTKILVEENA 963
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 25.0 bits (52), Expect = 7.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 351 KRDGLALTLSNDVQGDDGRPAYGD 422
K++G+ + ND G++G AY D
Sbjct: 364 KKEGITSSNKNDDSGNEGSSAYSD 387
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,981,536
Number of Sequences: 5004
Number of extensions: 34804
Number of successful extensions: 172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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