Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20193
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0605 + 4373697-4373872,4374840-4374876,4375296-4375399,437...    30   1.5  
12_01_0378 - 2946916-2947590                                           28   4.4  
06_03_0095 - 16575938-16576585,16577028-16577219,16577294-165773...    28   5.9  
04_04_1212 - 31786063-31786195,31786275-31786398,31786486-317865...    27   7.7  
03_06_0460 - 34098115-34098622,34098981-34099355,34100939-341011...    27   7.7  

>06_01_0605 +
           4373697-4373872,4374840-4374876,4375296-4375399,
           4375942-4376137,4376385-4376451,4376895-4376998,
           4377090-4377174,4377309-4377369,4377694-4377825,
           4377924-4377993,4379261-4379413,4379583-4379694,
           4379779-4379920,4380023-4380140,4380862-4380957,
           4381061-4381189
          Length = 593

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 184 SEVITNVVNKLIRNN--KMNCMEYAYNFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTS 354
           SE I+++ N+L R+   K+ C     N  S A      I S+L S LS+  TRL  CTS
Sbjct: 343 SEFISHLANQLARHQFLKIACQLERKNIAS-AYSLLRVIESELQSYLSAVNTRLGHCTS 400


>12_01_0378 - 2946916-2947590
          Length = 224

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +1

Query: 1   GLDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYD 141
           G+    ++P +++L    ASL AA++ VP    + ++  +VV  D+D
Sbjct: 87  GVHYDAIRPRLLLLLAGGASLGAANATVPGVFHQPRMSTTVVAIDFD 133


>06_03_0095 -
           16575938-16576585,16577028-16577219,16577294-16577392,
           16577496-16577618,16577717-16577929,16578143-16578251,
           16578339-16578427,16578604-16578880,16578974-16579084,
           16579160-16580508,16581218-16581631
          Length = 1207

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 23/74 (31%), Positives = 35/74 (47%)
 Frame = -3

Query: 395 ALNIIAQRQSETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKL*AYSMQFILLFRI 216
           +L +IA   S    +  K + + GE K    W   PDD     +PK  A +  F LL  +
Sbjct: 316 SLLVIALLGSVLFGIWTKEDLMNGEMK---RWYLRPDDSTIFYDPKRAALASFFHLLTAL 372

Query: 215 SLFTTFVMTSLFFS 174
            L++ F+  SL+ S
Sbjct: 373 MLYSYFIPISLYIS 386


>04_04_1212 -
           31786063-31786195,31786275-31786398,31786486-31786597,
           31786691-31786822,31786929-31787111,31787351-31787479,
           31787618-31787788,31788142-31788244,31788628-31788737,
           31789158-31789265,31789337-31789512,31790082-31790352,
           31790524-31790738,31791042-31792574,31792665-31792728,
           31793171-31793251
          Length = 1214

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/85 (23%), Positives = 38/85 (44%)
 Frame = +3

Query: 171 RGEEERSHHKCREQTDTKQQDELHGVRLQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMY 350
           R EEER+  +  ++   K + E++  +LQ  L  +     + + +E     A + +KL Y
Sbjct: 455 RKEEERAAMEA-DRAQAKAEVEMNKNKLQNLLNSASRYADNLWYIEPHTYKAGDRVKLFY 513

Query: 351 KRDGLALTLSNDVQGDDGRPAYGDG 425
            R    L  + ++    G   + DG
Sbjct: 514 NRSSRPLMHNTEIWMHGGYNNWSDG 538


>03_06_0460 -
           34098115-34098622,34098981-34099355,34100939-34101156,
           34101235-34101297
          Length = 387

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 89  LGTSESAAYRDATKRHRITIAGFIFGAS 6
           +G +++A+Y  +T R  + +AG + GAS
Sbjct: 284 VGAADAASYCGSTSRRMVQVAGEVLGAS 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,063,210
Number of Sequences: 37544
Number of extensions: 231587
Number of successful extensions: 750
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)