Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20193
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    30   0.99 
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    30   0.99 
L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna polym...    29   1.7  
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    28   4.0  
U13019-4|AAC24451.1|  222|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical pr...    28   4.0  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    28   4.0  
Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z81532-7|CAJ34990.1|  363|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AL117202-30|CAO82060.1|  449|Caenorhabditis elegans Hypothetical...    27   9.2  
AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical...    27   9.2  
AL117202-15|CAC42376.1|  627|Caenorhabditis elegans Hypothetical...    27   9.2  
AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical...    27   9.2  
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 133 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 243
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 133 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 243
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna
           polymerase kappa) homologprotein 1 protein.
          Length = 518

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +3

Query: 171 RGEEERSHHKCREQTDTK---QQDELHGVRLQLWLQGSKDIVRDCFPVEFRLIFA 326
           R EE+    K R QT T+   Q+ E+    L++ L+ S+D+ RDC  ++    FA
Sbjct: 41  RIEEKVLEIKNRLQTATREERQKSEILMENLEMKLESSRDLSRDCVCIDMDAYFA 95


>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
           protein T07D4.4a protein.
          Length = 1022

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 259 FGSRAPRTSSGIVSQLSSDL--SSPKTRLSLCTSATVS 366
           FG  APRT SG + Q S++L  S+PKT       A++S
Sbjct: 145 FGVLAPRTLSGSIPQTSTNLEDSTPKTSTGGRFGASIS 182


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
 Frame = +1

Query: 13   PKMKPAIVILCLFVASLYAADSD-VPNDILEEQLY--NSVVVADYDSAVEKSKH-LYEEK 180
            P +K  +V LC+   +LY + S     + + EQLY  +SV  A    + ++ +  + EE 
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 181  KSEVITNVVNKLIRNNKMNCMEYAYN 258
            + E   N++N  +      C+E AY+
Sbjct: 982  EPETYHNILN--VMPEGQACLEKAYD 1005


>U13019-4|AAC24451.1|  222|Caenorhabditis elegans Hypothetical
           protein T12A2.15b protein.
          Length = 222

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +3

Query: 420 DGKDKTSPRVSWKLIALWENNKVYFKILNTNVTNT 524
           D KD+ +P VS KL+AL + NK  FK       NT
Sbjct: 120 DKKDQCNPYVSVKLVAL-DGNKEVFKKKTPTAKNT 153


>U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical
           protein T12A2.15a protein.
          Length = 713

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +3

Query: 420 DGKDKTSPRVSWKLIALWENNKVYFKILNTNVTNT 524
           D KD+ +P VS KL+AL + NK  FK       NT
Sbjct: 611 DKKDQCNPYVSVKLVAL-DGNKEVFKKKTPTAKNT 644


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
 Frame = +1

Query: 13   PKMKPAIVILCLFVASLYAADSD-VPNDILEEQLY--NSVVVADYDSAVEKSKH-LYEEK 180
            P +K  +V LC+   +LY + S     + + EQLY  +SV  A    + ++ +  + EE 
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 181  KSEVITNVVNKLIRNNKMNCMEYAYN 258
            + E   N++N  +      C+E AY+
Sbjct: 982  EPETYHNILN--VMPEGQACLEKAYD 1005


>Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical
           protein C38C10.3 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 271 APRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 366
           A + SSG+VSQ+SS  SS + R +L   ++ S
Sbjct: 91  AVKNSSGLVSQISSTTSSERKRRTLARPSSSS 122


>Z81532-7|CAJ34990.1|  363|Caenorhabditis elegans Hypothetical
           protein F36F2.3b protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 107 SFTIASSSPITTVRLKRASIYTRRRRAKSSQMS 205
           SFT+ASS P T +R+++ S  +  +  +  + S
Sbjct: 285 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS 317


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical protein
            F36F2.3a protein.
          Length = 1128

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 107  SFTIASSSPITTVRLKRASIYTRRRRAKSSQMS 205
            SFT+ASS P T +R+++ S  +  +  +  + S
Sbjct: 1050 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS 1082


>U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical
           protein C03F11.3 protein.
          Length = 563

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 233 ILLFRISLFTTFVMTSLFFSSYK 165
           I LF +S FTT  +  L FS YK
Sbjct: 206 ISLFNVSPFTTVTVDQLLFSGYK 228


>AL117202-30|CAO82060.1|  449|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17d protein.
          Length = 449

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 356 ALVHKLNRVFGEDKSELNWETIPD 285
           AL+H+    + E K + NWE  PD
Sbjct: 424 ALIHQFKGGYWEAKEQQNWEKCPD 447


>AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17c protein.
          Length = 842

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 356 ALVHKLNRVFGEDKSELNWETIPD 285
           AL+H+    + E K + NWE  PD
Sbjct: 817 ALIHQFKGGYWEAKEQQNWEKCPD 840


>AL117202-15|CAC42376.1|  627|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17b protein.
          Length = 627

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 356 ALVHKLNRVFGEDKSELNWETIPD 285
           AL+H+    + E K + NWE  PD
Sbjct: 602 ALIHQFKGGYWEAKEQQNWEKCPD 625


>AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17a protein.
          Length = 766

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 356 ALVHKLNRVFGEDKSELNWETIPD 285
           AL+H+    + E K + NWE  PD
Sbjct: 741 ALIHQFKGGYWEAKEQQNWEKCPD 764


>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
           protein H20J04.2 protein.
          Length = 1427

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 40  LCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSE 189
           LC F +       DV     EE+L +   VAD+   V++ K   +E+  E
Sbjct: 382 LCFFFSEARRLGIDVGGLEQEEKLLSGKAVADFKQRVKEEKDAEKERAKE 431


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,949,014
Number of Sequences: 27780
Number of extensions: 195877
Number of successful extensions: 761
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)