Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20192
(501 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 29 0.52
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 1.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.2
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M... 27 1.6
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 27 2.1
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 4.8
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 25 6.4
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 6.4
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 25 6.4
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 8.4
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 25 8.4
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 28.7 bits (61), Expect = 0.52
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3
Query: 352 VHKLNRVFGEDKSELNWETIPDDVL 278
+H + EDKS+L +ETIPD VL
Sbjct: 9 IHPVRHSKYEDKSKLPFETIPDPVL 33
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 1.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 108 QLYNSVXVADYDSAVEKSKHLYEEKKS 188
QL N DY+ E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 1.2
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 267 SRAPRTSSGIVSQLSSDLSSP-KTRLSLCTSATVS 368
S P T S + S LSS SSP T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601
>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 27.1 bits (57), Expect = 1.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 284 CPWSPGAKVDGVLHAVHLVVSYQFV 210
CPWS G +DG+L + + +S +FV
Sbjct: 52 CPWSIGNLLDGILSVLTIYIS-EFV 75
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 2.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 297 VSQLSSDLSSPKTRLSLCTSATV 365
VS L +DL + KT+LS SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 4.8
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -2
Query: 293 PGRCPWSPGAKVDGVLHAVHLVVSYQFVHDI 201
P + PW PG K++ V Y+ +H+I
Sbjct: 70 PSKIPWLPGGKINADEKLVADPSVYEMLHNI 100
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 25.0 bits (52), Expect = 6.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 283 VLGALEPKLMAYSMQFILLFRISLFTTFVMTSLFFSS 173
+L + KLM Y F+ L S+F TF+ F S+
Sbjct: 502 LLNSFNQKLMEYFKGFVKLDYFSIFITFLHVCSFGSN 538
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.0 bits (52), Expect = 6.4
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 367 ETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKL 257
E V +H L+ F ED+ E E I DV A++PKL
Sbjct: 2004 ELVTTLHSLDVFFAEDRDE---ELIQPDV--AVDPKL 2035
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 25.0 bits (52), Expect = 6.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 353 KRDGLALTLSNDVQGDDGRPAYGD 424
K++G+ + ND G++G AY D
Sbjct: 364 KKEGITSSNKNDDSGNEGSSAYSD 387
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 218 DTKQQDELHGVRHQLWLQGSKDIVRDCFPVEFRLI 322
DT++ ELH + +L+ K V D FP + +I
Sbjct: 753 DTEKVTELHQILKPFFLRRVKSEVLDNFPTKVEVI 787
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 78 SDVPNDILEEQLYNSVXVADYDSAVEKSKHLY 173
S +P I E Q + + EKSKHLY
Sbjct: 129 SHIPGMITENQTNDDAKEVNGSDVDEKSKHLY 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,771,006
Number of Sequences: 5004
Number of extensions: 30725
Number of successful extensions: 127
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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