Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20192
(501 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24) 29 2.2
SB_32194| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_17366| Best HMM Match : Filament (HMM E-Value=0.14) 28 5.0
SB_47995| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09) 28 5.0
SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +3
Query: 108 QLYNSVXVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAINFGSRAPRTS 287
++YNS+ Y+S K + K + + N + + N + NC+ + IN + S
Sbjct: 325 EIYNSLDNKIYNSLDNKIYNSLNNKINNSLDNKIYNSLDNKRYNCLNFHINTDHHSYHAS 384
Query: 288 S 290
S
Sbjct: 385 S 385
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +3
Query: 108 QLYNSVXVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAINFGSRAPRTS 287
++YNS+ Y+S K + K + + N + + N + NC+ + IN + S
Sbjct: 418 EIYNSLDNKIYNSLDNKIYNSLNNKINNSLDNKIYNSLDNKRYNCLNFHINTDHHSYHAS 477
Query: 288 S 290
S
Sbjct: 478 S 478
>SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24)
Length = 453
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 180 KKSEVITNVVNKLIRNNKMNCMEYAINFGSRAPRTSSGIVSQLSSD 317
K+ ++TN+ + I N++N + INF R S + +++SSD
Sbjct: 214 KEKMILTNLKSPRITANQLNVYKNQINFLKRMFELQSALEAEVSSD 259
>SB_32194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 28.7 bits (61), Expect = 2.8
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +3
Query: 159 SKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAINFGSRAPRTSSGIVSQLSSDLSSPKTR 338
S+ L +EKK E ++ + + N K + + + NF + P S +L ++ +S +
Sbjct: 224 SQRLEKEKKKEWVSCIKKTEVTNRKRSLVSFLRNFATGNPFFPSFFHYELPAEEASGTST 283
Query: 339 LSLCTSATVSL 371
L T VSL
Sbjct: 284 GRLITRCQVSL 294
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 28.3 bits (60), Expect = 3.8
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +3
Query: 114 YNSVXVADYDSAVEKSKHLYEEKKSEVITNVVNKL--IRNNKMNCMEYAINFGSRAPRTS 287
++SV +DS+V + L+E KK +++ L + + N + SR P S
Sbjct: 910 FHSVGGTSWDSSVADEEDLFEVKKKPDKPSLLAALKPVARQESNASLKSNKSASRIPVRS 969
Query: 288 SGIVSQLSSDLSS---PKTRLSLCTS 356
+ S +S D S P +R+ + +S
Sbjct: 970 DSVKSSVSVDFKSKEPPASRIPVLSS 995
>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 588
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +1
Query: 73 QIPTSLTTFWRSSFTIASXSPITTVRLKRASIYTRRRRAKSSQM 204
+IPTS R SFTI P + VR R S +T RR +S++
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRV 445
>SB_17366| Best HMM Match : Filament (HMM E-Value=0.14)
Length = 306
Score = 27.9 bits (59), Expect = 5.0
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +3
Query: 150 VEKSKHL---YEEKKSEVITNVVNKLIRNNKMNCMEYAINFGSRAPRTSSGIVSQLSSDL 320
VEK+ L +E +K E+ ++++ E++ F + + T SG++ QL DL
Sbjct: 57 VEKNAELRQHFEIEKEELNRKLIHEKEELRYSLEAEFSQKFVNESA-TQSGVIQQLDGDL 115
Query: 321 SSPKTRLSLCTSATVSL 371
KTR SA + L
Sbjct: 116 RMMKTRCGELESAMLEL 132
>SB_47995| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09)
Length = 745
Score = 27.9 bits (59), Expect = 5.0
Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 1/110 (0%)
Frame = +2
Query: 164 AFIRGEEERSHHKCREQTDTKQQDELHGVRHQLWLQGSKDIVRDCFPVEFRLIFAENAIK 343
A R E + CR+ D + V QL K + + C V RL+ E
Sbjct: 192 ASARSSLEFAERMCRDANDVDVLSIRNEVLSQLSSLAEKPVDQACTEVGVRLVVDEKYWD 251
Query: 344 LMYKRDGLALTLSNDVQGDDGRPAYGDGKDKTSPR-VSWKVNRSVGEQQG 490
+ K++ + LSN G + G ++ R V V RSVG G
Sbjct: 252 TLSKKNSVG-DLSNRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVG 300
>SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/80 (25%), Positives = 31/80 (38%)
Frame = +3
Query: 78 SDVPNDILEEQLYNSVXVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAI 257
SDVP + Y + + D DSA + S KS + N V + C +
Sbjct: 42 SDVPEPVAASTPYQTRELRDMDSANDGSSLKKHTDKSNMAHNAVERFSTETTSVCRSVSE 101
Query: 258 NFGSRAPRTSSGIVSQLSSD 317
S+ P +S + + SD
Sbjct: 102 ESQSQEPISSVLVHDESFSD 121
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,573,718
Number of Sequences: 59808
Number of extensions: 237844
Number of successful extensions: 830
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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