Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20192
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    30   0.82 
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    30   0.82 
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z82062-3|CAB04892.1|  384|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila...    27   7.6  
U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U21317-6|AAA62527.1|  313|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AL117202-30|CAO82060.1|  449|Caenorhabditis elegans Hypothetical...    27   7.6  
AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical...    27   7.6  
AL117202-15|CAC42376.1|  627|Caenorhabditis elegans Hypothetical...    27   7.6  
AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical...    27   7.6  
AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPas...    27   7.6  
AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane cal...    27   7.6  
AC025724-12|AAK68550.1| 1160|Caenorhabditis elegans Membrane cal...    27   7.6  
AC025724-11|AAM97979.1| 1137|Caenorhabditis elegans Membrane cal...    27   7.6  
AC006665-5|AAF39907.1|  630|Caenorhabditis elegans Hypothetical ...    27   7.6  

>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 135 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 245
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 135 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 245
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
           protein T07D4.4a protein.
          Length = 1022

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 261 FGSRAPRTSSGIVSQLSSDL--SSPKTRLSLCTSATVS 368
           FG  APRT SG + Q S++L  S+PKT       A++S
Sbjct: 145 FGVLAPRTLSGSIPQTSTNLEDSTPKTSTGGRFGASIS 182


>Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical
           protein C38C10.3 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 273 APRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 368
           A + SSG+VSQ+SS  SS + R +L   ++ S
Sbjct: 91  AVKNSSGLVSQISSTTSSERKRRTLARPSSSS 122


>Z82062-3|CAB04892.1|  384|Caenorhabditis elegans Hypothetical
           protein W02A11.5 protein.
          Length = 384

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -3

Query: 367 ETVALVHKLNRVFGEDKSELNWET--IPDDVLGALEPKLMAYSMQFILLFRISLFTTFVM 194
           +TV L  K  R F E  +E++     + D+     +  L A S  F LLF+ S  + F +
Sbjct: 297 KTVGLSKKKLRCFDESAAEVSDAVMIVKDEKFHVSKMFLAAQSSNFKLLFKNSNNSEFTL 356

Query: 193 TSLFFSSYKCLL 158
             +    ++C L
Sbjct: 357 DGINSEDFQCFL 368


>Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical
           protein C03C10.4 protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/84 (22%), Positives = 41/84 (48%)
 Frame = +3

Query: 93  DILEEQLYNSVXVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAINFGSR 272
           D+L+ ++     + +  SA++KS+  YE K  EV+T  +N  +    M+ +E+ +     
Sbjct: 152 DLLQLEMALRKCLEENGSAIKKSRPYYERK--EVLTRTMNSQL--ELMSILEHEVQERKD 207

Query: 273 APRTSSGIVSQLSSDLSSPKTRLS 344
           +   S   + Q+S  +   ++  S
Sbjct: 208 SYSDSMRALEQISDQIHQERSSQS 231


>U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila
            roughdeal) homologprotein 1 protein.
          Length = 2049

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +3

Query: 147  AVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAINFGSRAPRTSS 290
            A++  + L   +  + +   V KLIRN+K++  EY + + +   R +S
Sbjct: 1412 AIDLRQPLSPLRLHDYVKKYVEKLIRNSKISVGEYMVRYATLLIRKAS 1459


>U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical
           protein C03F11.3 protein.
          Length = 563

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 235 ILLFRISLFTTFVMTSLFFSSYK 167
           I LF +S FTT  +  L FS YK
Sbjct: 206 ISLFNVSPFTTVTVDQLLFSGYK 228


>U21317-6|AAA62527.1|  313|Caenorhabditis elegans Hypothetical
           protein B0495.8a protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 75  DSDVPNDILEEQLYNSVXVADYDSAVEKSKHLYEEKKSEVITNVVN 212
           DS + N +   +++     ADY+ A ++  H Y+    E+I + V+
Sbjct: 49  DSRLQNVVSCRKVHEPAHKADYERAQKEKDHFYDVDAFEIIEHAVH 94


>AL117202-30|CAO82060.1|  449|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17d protein.
          Length = 449

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 358 ALVHKLNRVFGEDKSELNWETIPD 287
           AL+H+    + E K + NWE  PD
Sbjct: 424 ALIHQFKGGYWEAKEQQNWEKCPD 447


>AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17c protein.
          Length = 842

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 358 ALVHKLNRVFGEDKSELNWETIPD 287
           AL+H+    + E K + NWE  PD
Sbjct: 817 ALIHQFKGGYWEAKEQQNWEKCPD 840


>AL117202-15|CAC42376.1|  627|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17b protein.
          Length = 627

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 358 ALVHKLNRVFGEDKSELNWETIPD 287
           AL+H+    + E K + NWE  PD
Sbjct: 602 ALIHQFKGGYWEAKEQQNWEKCPD 625


>AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17a protein.
          Length = 766

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 358 ALVHKLNRVFGEDKSELNWETIPD 287
           AL+H+    + E K + NWE  PD
Sbjct: 741 ALIHQFKGGYWEAKEQQNWEKCPD 764


>AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPase
           protein.
          Length = 1237

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 152 NRTVVIGDXDAIVKLLLQNVVRDVGICSIQRCHE 51
           N  +++GD  AI  L +Q+ VR     +I RC E
Sbjct: 634 NEEMIVGDMTAIAVLGIQDPVRPEVPAAITRCQE 667


>AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane
           calcium atpase protein3, isoform b protein.
          Length = 1234

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 152 NRTVVIGDXDAIVKLLLQNVVRDVGICSIQRCHE 51
           N  +++GD  AI  L +Q+ VR     +I RC E
Sbjct: 634 NEEMIVGDMTAIAVLGIQDPVRPEVPAAITRCQE 667


>AC025724-12|AAK68550.1| 1160|Caenorhabditis elegans Membrane
           calcium atpase protein3, isoform a protein.
          Length = 1160

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 152 NRTVVIGDXDAIVKLLLQNVVRDVGICSIQRCHE 51
           N  +++GD  AI  L +Q+ VR     +I RC E
Sbjct: 634 NEEMIVGDMTAIAVLGIQDPVRPEVPAAITRCQE 667


>AC025724-11|AAM97979.1| 1137|Caenorhabditis elegans Membrane
           calcium atpase protein3, isoform c protein.
          Length = 1137

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 152 NRTVVIGDXDAIVKLLLQNVVRDVGICSIQRCHE 51
           N  +++GD  AI  L +Q+ VR     +I RC E
Sbjct: 634 NEEMIVGDMTAIAVLGIQDPVRPEVPAAITRCQE 667


>AC006665-5|AAF39907.1|  630|Caenorhabditis elegans Hypothetical
           protein H27M09.1 protein.
          Length = 630

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = -3

Query: 490 TLLFSH---RAINFPADSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRV 332
           TLLFS    R I F A S     + V VGR+   +LN++  ++ E V   +KL RV
Sbjct: 380 TLLFSATMPRKIQFFAKSALVKPIVVNVGRAGAASLNVL--QELEFVRSENKLVRV 433


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,918,041
Number of Sequences: 27780
Number of extensions: 177734
Number of successful extensions: 685
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)