Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20192
(501 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.8
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 22 3.1
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.1
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 22 4.1
AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 21 5.5
AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 21 5.5
AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly pro... 21 7.2
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 21 9.5
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 21 9.5
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.0 bits (47), Expect = 1.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -3
Query: 457 PADSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVF 329
P DS L L V + S V LN++A+ T V + F
Sbjct: 219 PPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYF 261
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.0 bits (47), Expect = 1.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -3
Query: 457 PADSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVF 329
P DS L L V + S V LN++A+ T V + F
Sbjct: 219 PPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYF 261
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.0 bits (47), Expect = 1.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -3
Query: 457 PADSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVF 329
P DS L L V + S V LN++A+ T V + F
Sbjct: 219 PPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYF 261
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 1.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -3
Query: 457 PADSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVF 329
P DS L L V + S V LN++A+ T V + F
Sbjct: 287 PPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYF 329
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 22.2 bits (45), Expect = 3.1
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +2
Query: 176 GEEERSHHKCREQTDTKQQDELHGVRHQ 259
GE S + RE ++ D+LH V +
Sbjct: 249 GERSCSRDRSREYKKDRRYDQLHNVEEK 276
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 457 PADSRACLVLAVAVGRSAIVALNIIAQ 377
P DS L L V + S V LN++A+
Sbjct: 219 PPDSGEKLTLGVTILLSLTVFLNLVAE 245
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 457 PADSRACLVLAVAVGRSAIVALNIIAQ 377
P DS L L V + S V LN++A+
Sbjct: 219 PPDSGEKLTLGVTILLSLTVFLNLVAE 245
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 457 PADSRACLVLAVAVGRSAIVALNIIAQ 377
P DS L L V + S V LN++A+
Sbjct: 219 PPDSGEKLTLGVTILLSLTVFLNLVAE 245
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 4.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 457 PADSRACLVLAVAVGRSAIVALNIIAQ 377
P DS L L V + S V LN++A+
Sbjct: 287 PPDSGEKLTLGVTILLSLTVFLNLVAE 313
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 21.8 bits (44), Expect = 4.1
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +2
Query: 317 LIFAENAIKLMYKRDGLALTLSNDVQGDDGRPAYGDGKDKTSPRVS 454
L E IK+ ++ + N +G P GDG + SP+ S
Sbjct: 307 LCLTERQIKIWFQNRRMKWKKENKSKGT---PGSGDGDTEISPQTS 349
>AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.4 bits (43), Expect = 5.5
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 179 EEERSHHKCREQTDTKQQDELH 244
+EER K R+Q++ + LH
Sbjct: 181 QEERQRTKERDQSEVESTSSLH 202
>AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.4 bits (43), Expect = 5.5
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 179 EEERSHHKCREQTDTKQQDELH 244
+EER K R+Q++ + LH
Sbjct: 181 QEERQRTKERDQSEVESTSSLH 202
>AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly
protein MRJP5 protein.
Length = 598
Score = 21.0 bits (42), Expect = 7.2
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = -3
Query: 403 IVALNIIAQRQSETVALVHKLNRV 332
+VA+ ++ QS + +H++NRV
Sbjct: 355 VVAMKMMHLPQSNKMNRMHRMNRV 378
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 20.6 bits (41), Expect = 9.5
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +3
Query: 156 KSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAINFGSRAP 278
K + + + I+N+ N NN + Y IN+ + P
Sbjct: 77 KERKIISSLSNNYISNISNYNNNNNYNKKLYYNINYIEQIP 117
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 20.6 bits (41), Expect = 9.5
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +3
Query: 156 KSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAINFGSRAP 278
K + + + I+N+ N NN + Y IN+ + P
Sbjct: 315 KERKIISSLSNNYISNISNYNNNNNYNKKLYYNINYIEQIP 355
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,562
Number of Sequences: 438
Number of extensions: 2006
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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