Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20192
         (501 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b...    33   0.14 
At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f...    31   0.58 
At1g80840.1 68414.m09484 WRKY family transcription factor simila...    27   5.4  
At5g64820.1 68418.m08155 hypothetical protein                          27   7.1  
At5g39510.1 68418.m04784 vesicle transport v-SNARE 11 (VTI11) / ...    27   7.1  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    27   7.1  
At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identi...    27   9.4  
At4g28590.1 68417.m04089 expressed protein                             27   9.4  

>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
           binding region-containing protein similar to U4/U6
           snRNP-associated 61 kDa protein [Homo sapiens]
           GI:18249847; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 485

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 27  PAIVILCLFVASLYAADSDVPNDILEEQLYNSVXVADYDSAVEKSKHLYEEKKSEVITNV 206
           P+ +I+ + V +L    S +P D+L++ L       D DSA +K     E K   +  N+
Sbjct: 161 PSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKMGSIAPNL 220


>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
           family protein contains Pfam profile PF01812
           5-formyltetrahydrofolate cyclo-ligase
          Length = 354

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 276 PRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 368
           PR  +G  S L SDL  P+T +  CTS  V+
Sbjct: 171 PRLRTGFFSVLESDLLKPETIMEACTSVGVA 201


>At1g80840.1 68414.m09484 WRKY family transcription factor similar
           to WRKY transcription factor GB:BAA87058 GI:6472585 from
           [Nicotiana tabacum]
          Length = 302

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 364 TVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKLMAY 248
           T ALV +LNRV  E+K      T+  D    L  +LM Y
Sbjct: 30  TSALVEELNRVSAENKKLSEMLTLMCDNYNVLRKQLMEY 68


>At5g64820.1 68418.m08155 hypothetical protein 
          Length = 145

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 16/68 (23%), Positives = 34/68 (50%)
 Frame = -3

Query: 439 CLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPK 260
           C+++ +  G SA  A +  A ++ E  ++V  ++ +FG      +WE I    +  ++ K
Sbjct: 15  CIIIILISGVSADGAESDSAAKKEENPSIVKIISGIFGNKFPPSSWELI-QGAMQKIQMK 73

Query: 259 LMAYSMQF 236
           L   ++ F
Sbjct: 74  LYPPNLDF 81


>At5g39510.1 68418.m04784 vesicle transport v-SNARE 11 (VTI11) /
           vesicle soluble NSF attachment protein receptor VTI1a
           (VTI1A) identical to SP|Q9SEL6 Vesicle transport v-SNARE
           11 (AtVTI11) (Vesicle transport v-SNARE protein VTI1a)
           (Vesicle soluble NSF attachment protein receptor VTI1a)
           (AtVTI1a) {Arabidopsis thaliana}
          Length = 221

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
 Frame = +3

Query: 144 SAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAINFGSRAPRTSSGIVSQL---SS 314
           SA+       ++K SE+ + + N  +   KM+     +   +  P   S ++ +L    S
Sbjct: 25  SAISLDGEQKKQKLSEIKSGLENAEVLIRKMD-----LEARTLPPNLKSSLLVKLREFKS 79

Query: 315 DLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATARTR 437
           DL++ KT +   TS  ++      + +A MAD  TA+A  R
Sbjct: 80  DLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQR 120


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 116 VKLLLQNVVRDVGICSIQRCH 54
           +K  ++N+++  G+CSIQR H
Sbjct: 727 LKEAMRNILKTKGVCSIQRLH 747


>At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identical
            to PIR|S51824 myosin heavy chain MYA2 [Arabidopsis
            thaliana]
          Length = 1505

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
 Frame = -3

Query: 409  SAIVALNIIAQRQSETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKLMAYSMQFIL 230
            S +++L I A R S+   L  +  R FG+D   ++W++I D  L +L   L    +  +L
Sbjct: 1269 STLLSLCIQAPRSSKGGML--RSGRSFGKDSPAVHWQSIIDG-LNSLLVTLKENHVPLVL 1325

Query: 229  LFRI-SLFTTFVMTSLFFS 176
            + +I S   +++   LF S
Sbjct: 1326 IQKIYSQTFSYINVQLFNS 1344


>At4g28590.1 68417.m04089 expressed protein 
          Length = 331

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 349 HKLNRVFGEDKSELNWETIPDD 284
           H +  V G+D SE++WE   DD
Sbjct: 180 HPIKNVVGDDGSEIDWEGEIDD 201


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,423,704
Number of Sequences: 28952
Number of extensions: 165768
Number of successful extensions: 744
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)